Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m15
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    30   0.43 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    29   0.57 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.76 
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    27   2.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   4.0  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.4  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   7.1  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    26   7.1  
SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    25   9.4  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   9.4  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.4  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 116 ILILERHF---CFKHGWIEHSEAI*IWRASMLWVINHPSTILSY 238
           ILIL   F    ++H WI H + I +WR    W+ +   TI +Y
Sbjct: 377 ILILAASFMLGAYRH-WINHEKKIDLWRPFSFWLFSIFCTIAAY 419


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 208 HPEHRRPPYLNSLGMFDPAVLEAKMSFQNQYHEAPIQKPLST 83
           HP H + PY+++ G+  P+ LEAK S         +  PL +
Sbjct: 288 HPLHSQQPYVDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQS 329


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = -2

Query: 573 SKNYFRLSSIHMSLEALELFQKNYLQSMERLPSRWENQRNLAMLH*NERYQET*RQKIAL 394
           SK  F L  +   L   E ++K  ++ M +L  R  ++R++A     ++Y E+  QKI L
Sbjct: 119 SKISFLLQQLEFKLSVEEQYRKG-IEKMAKLYEREHDRRSIAEAE--KKYVES-AQKITL 174

Query: 393 IKQLL 379
           +KQ L
Sbjct: 175 LKQAL 179


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 139 KMSFQNQYHEAPIQKPLSTEPESVEHIRRRLSELAETNLG 20
           K++ Q      P +K L+    SV H+ RRL+E AE  LG
Sbjct: 122 KITVQEDEESDPKEKILTAHEASVRHL-RRLTESAEDFLG 160


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 520 VISKELPTIDGKIAVAVGKPEKSCYAALEREISRDIKAENCSNKTIA 380
           V+S ++ T D  ++ A  + EKS     ++    D+K +  SN+TIA
Sbjct: 68  VVSIDINTEDSSLSPAKQENEKSPEGIEQKYQEEDLKDDKKSNETIA 114


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 89  KRFLDWGFMILILERHFCFKHGWIEHSEAI*IWRASMLWVINHPSTIL 232
           K+ L WG+ ILI+       +G+   +    ++ A+M+W     ST+L
Sbjct: 254 KQNLSWGYKILIVLTSQMLGYGFAGLTRRWIVYPAAMIWPQTLVSTVL 301


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 36  ANSESLLRMCSTDSGSVESGFWIG 107
           AN  SLL   +TD G    G W+G
Sbjct: 748 ANDSSLLNWANTDQGMDIEGSWLG 771


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
 Frame = -1

Query: 586 SPKAIKELFQIEFDTHVARSLRVISKELPTIDGKIAVAVGKPEKSCYAALEREISRDIKA 407
           SP  I+     ++D++      V+S      D    + V  PE+  Y+  +   +  +  
Sbjct: 399 SPIPIRVSSDKDYDSYACHE--VVSNPSTLDDDYNYMFVCPPEEYTYST-DNVRTDSLDL 455

Query: 406 ENCSNKTIAFGQSLP--RHDQYRAPNNNTKNQWRSARYVPKDLVTLKAVWEGITNLRSVR 233
           ++    T+   +S+P  R+   R   + T +   S  Y P  L T +   +G+TNL  V+
Sbjct: 456 QSLPTPTLEQLESVPFNRYGYVRIFPSTTLSSTASGYYTPDSLSTPEPSIDGLTNLDDVQ 515


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 406 ENCSNKTIAFGQ--SLPRHDQYRAPNNNTKNQWRSARYVPKDLV 281
           E+CSNKT+A  Q    P  +     +NN     +  R++ ++ +
Sbjct: 236 ESCSNKTVASSQRRGTPGSNNVHTASNNETPDMKRRRFLERNRI 279


>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 129 KDIFASSTAGSNIPRLFKYGGRLC 200
           KD+ AS T G+++ R F+   R+C
Sbjct: 45  KDLGASVTVGNSLTRAFRQVDRIC 68


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 346 RAPNNNTKNQWRSARYVPKDLVTL 275
           RAPNN T +    ++ VPKD + +
Sbjct: 243 RAPNNPTSDSISRSKAVPKDRINM 266


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 764 LQPEREDEKTLIKKADDLTERKVLLTVELT 675
           L P  E EKT I + D+ T+R VL+ + LT
Sbjct: 440 LLPISELEKTRILQVDNPTDRLVLVLIWLT 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,797
Number of Sequences: 5004
Number of extensions: 67046
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)