Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m15
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 33 0.20
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473... 29 4.2
04_04_0589 + 26449184-26450500,26452220-26452310,26452428-264525... 29 4.2
03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347... 29 4.2
11_04_0140 - 13945911-13946195,13946290-13946772 28 9.7
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252... 28 9.7
02_01_0053 + 397406-397609,398483-398561,398648-398742,399289-39... 28 9.7
01_06_1378 + 36788283-36789734 28 9.7
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467... 28 9.7
01_01_0018 + 139150-140415 28 9.7
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 112 HDTDFGKTFLLQARLDRTFRGYLNMEGVYALGDQSSIYNTLLRSVN 249
H+T+ G FLL L R N E V A+ S++Y+T RS N
Sbjct: 285 HNTERGDIFLLCTELPRDSSQLCNDEAVLAMATCSNLYDTFQRSFN 330
>11_01_0595 +
4732330-4732723,4732839-4732903,4733023-4733143,
4733596-4733687,4733850-4733915,4734106-4734125,
4734147-4734239,4734358-4734445,4734570-4734635,
4734728-4734843,4735410-4735500,4736133-4736234,
4736342-4736425,4736551-4736643,4736728-4736823,
4736914-4736999,4737528-4737606,4737675-4737788,
4737890-4737985,4738060-4738123,4738221-4738510,
4738901-4738956,4739060-4739177,4739287-4739367,
4739683-4739762,4740001-4740055,4740142-4740211,
4740279-4740468,4740567-4740690,4741055-4741129,
4741217-4741390
Length = 1112
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 178 NSLGMFDPAVLEAKMSFQNQYHEAPIQKPLSTEPESVE 65
+SLG+ A + AK +++ +E P QK ST ESVE
Sbjct: 664 SSLGLLAKAAIIAKYVQRSERNEWPFQKAKSTIAESVE 701
>04_04_0589 +
26449184-26450500,26452220-26452310,26452428-26452585,
26452670-26452768,26453296-26453345,26453654-26453705,
26453773-26454058,26454286-26454400,26454938-26455020,
26455381-26455466
Length = 778
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 141 QKCLSKISIMKPQSKNRFQLNQNPWNTFEGDSQN*LKLIWVK 16
+K S +M P+ + F L++ P TFEG S++ L L W K
Sbjct: 398 RKSASSDRLMFPE--HVFALSEKPVKTFEGHSEDVLDLCWSK 437
>03_01_0453 -
3471656-3471819,3472416-3472580,3473062-3473145,
3473304-3473375,3473496-3473574,3473894-3473990,
3474064-3474116,3474257-3474386,3474464-3474498,
3476108-3476212,3476759-3476833,3477671-3477799,
3477918-3478097,3478737-3478820,3478943-3479059,
3479170-3479242,3479316-3479437,3479519-3479641,
3479917-3479989,3480218-3480396,3480699-3480837,
3481105-3481259,3481570-3481875
Length = 912
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 585 LLKRSKNYFRLSSIHMSLEALELFQKNYL 499
L KR+ YFR+SS H A EL+Q ++
Sbjct: 412 LQKRASRYFRMSSEHTMKVAEELYQAGFI 440
>11_04_0140 - 13945911-13946195,13946290-13946772
Length = 255
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 274 KAVWEGITNLRSVREYCRWMIDHPEHRRPPYL----NSLGMFDPAVLEAKMSFQNQ 119
KAV E ITNL SV + HP R+P + N +G D + K+ Q
Sbjct: 126 KAVLEAITNLTSVYIRAPSLHPHPILRKPQFYPFFQNCIGAIDGTHIPMKLPLDEQ 181
>03_05_0357 -
23424234-23424567,23424796-23424923,23425024-23425205,
23425255-23425504
Length = 297
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 274 KAVWEGITNLRSVREYCRWMIDHPEHRRPPYL----NSLGMFDPAVLEAKMSFQNQ 119
KAV E ITNL SV + HP R+P + N +G D + K+ Q
Sbjct: 109 KAVQEAITNLTSVYIRAPSLHPHPILRKPQFYPFFQNCIGAIDGTHIPMKLPLDEQ 164
>02_01_0053 +
397406-397609,398483-398561,398648-398742,399289-399393,
399496-399575,399832-399922,400021-400128,400529-400615,
400862-400972
Length = 319
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 474 RWENQRNLAMLH*NERYQ-ET*RQKIALIKQLLLDKASLDTTSIELRIIIL 325
RW + +AM H RYQ + R +IAL K +D + +T +E ++++L
Sbjct: 226 RWAIMQGIAM-HLQNRYQRQRLRTRIALGKAKRMDVVAGETAGVEGQLLLL 275
>01_06_1378 + 36788283-36789734
Length = 483
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 370 FVQKQLFY*SNFLPLCLLISLVLMQHSKISLVFP 471
++QK LF+ + +P+ L+SL++ S+ +FP
Sbjct: 68 YIQKGLFFPAPDVPMASLVSLLMSSLSRALAIFP 101
>01_05_0132 -
18446105-18446197,18446281-18446372,18446684-18446783,
18446855-18447046,18447216-18447536,18447848-18447943,
18448006-18448098,18448181-18448306,18448358-18449053,
18449130-18449162
Length = 613
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/54 (20%), Positives = 27/54 (50%)
Frame = -2
Query: 666 ETDKKR*PTNFVST*NSLAVNNNPIYFLLKRSKNYFRLSSIHMSLEALELFQKN 505
E K++ ++S + N I+ + R+KN++ L+ +H+ ++L +
Sbjct: 496 EISKRQLEKGYISRITNQIAQNEQIFIPINRNKNHWYLAVVHVKQRQIQLLDSS 549
>01_01_0018 + 139150-140415
Length = 421
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 226 CRWMIDHPEHRRPPYLNSLGMFDPAVLEA 140
CR ++D P RPPY + L +F P A
Sbjct: 139 CR-LVDQPSTSRPPYQHQLPLFAPTYTPA 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,051,291
Number of Sequences: 37544
Number of extensions: 398433
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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