Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m15
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U80438-3|AAB37633.1|  185|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF303266-1|AAG50224.1|  185|Caenorhabditis elegans adenine phosp...    28   6.6  
Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 749 EDEKTLIKKADDLTERKVLLTVELTNKLKLTKKDSQRIL 633
           E E+TLI+K  + ++    L  +L N+L  TK   +RIL
Sbjct: 398 ESEQTLIEKVKNNSKAVASLNAQLKNELSYTKAVHKRIL 436


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 321 FLVLLFGARYWSCLGRLCPKAIVLLEQFSAFMSLDISRSNAA*QDFSGFPTATAIFPSIV 500
           FLVL+F  + WS +G+LC   +++    +  + +  S      Q  S   TA A +   V
Sbjct: 364 FLVLMFIPQTWSSVGQLCYSLVIVANGLNG-VGITRSAQLVCKQHMSFVYTARAFYNGSV 422

Query: 501 G 503
           G
Sbjct: 423 G 423


>Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical
           protein E04D5.2 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 600 NPIYFLLKRSKNYFRLSSIHMSLEALELFQKNYL-QSMERLPS 475
           N IY +L    +Y   + +H+ L  LE F  +YL +S +R+ S
Sbjct: 310 NAIYTMLAIVTSYLVCNGVHLFLTILERFDPSYLYESTDRMQS 352


>U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical
           protein F36H5.11 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 273 FSVTKSLGTYRADLHWFLVLLFGARYWSCLGRLCPKAIV 389
           FS+TKS G+Y  D     V+L G  YW    R  P A++
Sbjct: 455 FSLTKSRGSYSKD-----VVLKGINYWVAEEREVPNALI 488


>U80438-3|AAB37633.1|  185|Caenorhabditis elegans Hypothetical
           protein T19B4.3 protein.
          Length = 185

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 370 SLPRHDQYRAPNNNTKNQWRSARYVPKDLVTLKAVWEGITNLRSVREYCRWMIDHPEH 197
           +LPR DQ R      +   R  +  PK  +  + +    TN + V E C  + DH  H
Sbjct: 2   TLPRFDQIRP---KIEQHIREVKDFPKKGINFRDIMPLFTNPQLVNELCVVIADHVRH 56


>AF303266-1|AAG50224.1|  185|Caenorhabditis elegans adenine
           phosphoribosyltransferase protein.
          Length = 185

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 370 SLPRHDQYRAPNNNTKNQWRSARYVPKDLVTLKAVWEGITNLRSVREYCRWMIDHPEH 197
           +LPR DQ R      +   R  +  PK  +  + +    TN + V E C  + DH  H
Sbjct: 2   TLPRFDQIRP---KIEQHIREVKDFPKKGINFRDIMPLFTNPQLVNELCVVIADHVRH 56


>Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.2 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  FQLILRVSFECVPRILVQLKAVFGLGLHDTDFGK 132
           F L L +SF C   I V + A +G+G+ D D  K
Sbjct: 65  FVLDLTLSFLCTAYIFVPVMAGYGVGIVDIDTAK 98


>Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.1 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  FQLILRVSFECVPRILVQLKAVFGLGLHDTDFGK 132
           F L L +SF C   I V + A +G+G+ D D  K
Sbjct: 65  FVLDLTLSFLCTAYIFVPVMAGYGVGIVDIDTAK 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,863
Number of Sequences: 27780
Number of extensions: 361629
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)