Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m12
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233...    30   1.8  
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    30   2.4  
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734...    28   9.8  

>01_07_0255 -
           42322111-42322308,42322658-42322750,42323127-42323344,
           42323476-42323642,42324097-42324207,42324267-42324409,
           42324492-42324710,42324975-42325055,42325202-42325381,
           42325971-42326301,42326775-42326888,42327036-42327127,
           42327631-42328059
          Length = 791

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 291 ANKHLPNSSTIDHAIPVKHLEYKHLDLKHGIKRHQIKRIK 172
           +N+ +  SST++  +   H++YK LD KHG     + RI+
Sbjct: 634 SNQPVKESSTLEAILKKPHVQYKLLD-KHGYGNEHLSRIE 672


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 231 PNVSQELHDLSWMNSASVYLLGNFNELYQG 320
           P+ +Q   +LSWM   +VYL+ + N++Y+G
Sbjct: 50  PDWAQGSRELSWMPQCTVYLISS-NDIYEG 78


>04_04_0371 +
           24771687-24772081,24772139-24772535,24773394-24773435,
           24773571-24774305,24775357-24775480,24775613-24776580,
           24776917-24776925
          Length = 889

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 468 SCSQAAEIRIAKNKMKEAMNAICSSSRNVIGKKLFKVNKDELA*FPK 328
           SC  + E ++  N +   M  IC S R V   ++  VN    A F K
Sbjct: 432 SCKGSGEQQMLLNNLSSTMQRICKSLRTVYEAEVDNVNAGTAAVFRK 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,921
Number of Sequences: 37544
Number of extensions: 343654
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)