Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m12
         (794 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109126-1|AAI09127.1|  872|Homo sapiens chromosome 10 open read...    34   0.68 
BC036225-1|AAH36225.1|  872|Homo sapiens chromosome 10 open read...    34   0.68 
AL355378-1|CAI15667.1|  872|Homo sapiens novel protein protein.        34   0.68 
AL162742-5|CAI12110.1|  872|Homo sapiens novel protein protein.        34   0.68 
AK093227-1|BAC04102.1|  550|Homo sapiens protein ( Homo sapiens ...    31   3.6  
Y13115-1|CAA73575.1|  970|Homo sapiens serine/threonine protein ...    31   4.8  
BC036023-1|AAH36023.1|  970|Homo sapiens polo-like kinase 4 (Dro...    31   4.8  
AB006972-1|BAB69958.1|  970|Homo sapiens Sak protein.                  31   4.8  

>BC109126-1|AAI09127.1|  872|Homo sapiens chromosome 10 open reading
           frame 80 protein.
          Length = 872

 Score = 33.9 bits (74), Expect = 0.68
 Identities = 33/143 (23%), Positives = 67/143 (46%)
 Frame = -3

Query: 600 FHFRKFRDVKIYRISLIAYIIMKYYEDVKQQYCTRTK*EQKIHDSCSQAAEIRIAKNKMK 421
           FH  K RD  I + S +   ++   ED+K +       E +I D   + AE  I K K +
Sbjct: 436 FHLEKERDRYINQASDLTQKVLMNMEDIKVR-------ETQIFDYRKKIAESEI-KLKQQ 487

Query: 420 EAMNAICSSSRNVIGKKLFKVNKDELA*FPKKCSLGITH*NYQANKHLPNSSTIDHAIPV 241
           + +     S RN+  K L +  +DE+    +K  + I    +Q ++   + S  + A+  
Sbjct: 488 QNLYEAVRSDRNLYSKNLVEA-QDEITDMKRKLKIMI----HQVDELKEDISAKESALVK 542

Query: 240 KHLEYKHLDLKHGIKRHQIKRIK 172
            HLE + ++ +    + ++++++
Sbjct: 543 LHLEQQRIEKEKETLKAELQKLR 565


>BC036225-1|AAH36225.1|  872|Homo sapiens chromosome 10 open reading
           frame 80 protein.
          Length = 872

 Score = 33.9 bits (74), Expect = 0.68
 Identities = 33/143 (23%), Positives = 67/143 (46%)
 Frame = -3

Query: 600 FHFRKFRDVKIYRISLIAYIIMKYYEDVKQQYCTRTK*EQKIHDSCSQAAEIRIAKNKMK 421
           FH  K RD  I + S +   ++   ED+K +       E +I D   + AE  I K K +
Sbjct: 436 FHLEKERDRYINQASDLTQKVLMNMEDIKVR-------ETQIFDYRKKIAESEI-KLKQQ 487

Query: 420 EAMNAICSSSRNVIGKKLFKVNKDELA*FPKKCSLGITH*NYQANKHLPNSSTIDHAIPV 241
           + +     S RN+  K L +  +DE+    +K  + I    +Q ++   + S  + A+  
Sbjct: 488 QNLYEAVRSDRNLYSKNLVEA-QDEITDMKRKLKIMI----HQVDELKEDISAKESALVK 542

Query: 240 KHLEYKHLDLKHGIKRHQIKRIK 172
            HLE + ++ +    + ++++++
Sbjct: 543 LHLEQQRIEKEKETLKAELQKLR 565


>AL355378-1|CAI15667.1|  872|Homo sapiens novel protein protein.
          Length = 872

 Score = 33.9 bits (74), Expect = 0.68
 Identities = 33/143 (23%), Positives = 67/143 (46%)
 Frame = -3

Query: 600 FHFRKFRDVKIYRISLIAYIIMKYYEDVKQQYCTRTK*EQKIHDSCSQAAEIRIAKNKMK 421
           FH  K RD  I + S +   ++   ED+K +       E +I D   + AE  I K K +
Sbjct: 436 FHLEKERDRYINQASDLTQKVLMNMEDIKVR-------ETQIFDYRKKIAESEI-KLKQQ 487

Query: 420 EAMNAICSSSRNVIGKKLFKVNKDELA*FPKKCSLGITH*NYQANKHLPNSSTIDHAIPV 241
           + +     S RN+  K L +  +DE+    +K  + I    +Q ++   + S  + A+  
Sbjct: 488 QNLYEAVRSDRNLYSKNLVEA-QDEITDMKRKLKIMI----HQVDELKEDISAKESALVK 542

Query: 240 KHLEYKHLDLKHGIKRHQIKRIK 172
            HLE + ++ +    + ++++++
Sbjct: 543 LHLEQQRIEKEKETLKAELQKLR 565


>AL162742-5|CAI12110.1|  872|Homo sapiens novel protein protein.
          Length = 872

 Score = 33.9 bits (74), Expect = 0.68
 Identities = 33/143 (23%), Positives = 67/143 (46%)
 Frame = -3

Query: 600 FHFRKFRDVKIYRISLIAYIIMKYYEDVKQQYCTRTK*EQKIHDSCSQAAEIRIAKNKMK 421
           FH  K RD  I + S +   ++   ED+K +       E +I D   + AE  I K K +
Sbjct: 436 FHLEKERDRYINQASDLTQKVLMNMEDIKVR-------ETQIFDYRKKIAESEI-KLKQQ 487

Query: 420 EAMNAICSSSRNVIGKKLFKVNKDELA*FPKKCSLGITH*NYQANKHLPNSSTIDHAIPV 241
           + +     S RN+  K L +  +DE+    +K  + I    +Q ++   + S  + A+  
Sbjct: 488 QNLYEAVRSDRNLYSKNLVEA-QDEITDMKRKLKIMI----HQVDELKEDISAKESALVK 542

Query: 240 KHLEYKHLDLKHGIKRHQIKRIK 172
            HLE + ++ +    + ++++++
Sbjct: 543 LHLEQQRIEKEKETLKAELQKLR 565


>AK093227-1|BAC04102.1|  550|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35908 fis, clone TESTI2009935. ).
          Length = 550

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 33/128 (25%), Positives = 58/128 (45%)
 Frame = -3

Query: 600 FHFRKFRDVKIYRISLIAYIIMKYYEDVKQQYCTRTK*EQKIHDSCSQAAEIRIAKNKMK 421
           FH  K RD  I + S +   ++   ED+K +       E +I D   + AE  I K K +
Sbjct: 436 FHLEKERDRYINQASDLTQKVLMNMEDIKVR-------ETQIFDYRKKIAESEI-KLKQQ 487

Query: 420 EAMNAICSSSRNVIGKKLFKVNKDELA*FPKKCSLGITH*NYQANKHLPNSSTIDHAIPV 241
           + +     S RN+  K L +  +DE+    +K  + I    +Q ++   + S  + A+  
Sbjct: 488 QNLYEAVRSDRNLYSKNLVEA-QDEITDMKRKLKIMI----HQVDELKEDISAKESALVK 542

Query: 240 KHLEYKHL 217
            HLE + +
Sbjct: 543 LHLEQQRI 550


>Y13115-1|CAA73575.1|  970|Homo sapiens serine/threonine protein
           kinase protein.
          Length = 970

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = -3

Query: 300 NYQANKHLPNSSTIDHAIPVKHLEYKHLDLKHGIKRHQIKRIKSNFNTGRSRITVSIKPN 121
           N Q N HL  ++  D   P +  +  H DL+    ++     K   N+  S    S+K  
Sbjct: 482 NLQINAHLRKTTEYDSISPNRDFQ-GHPDLQKDTSKNAWTDTKVKKNSDASDNAHSVKQQ 540

Query: 120 HTSVYINYVHNKCTYVQ 70
           +T  Y+  +H+K   +Q
Sbjct: 541 NTMKYMTALHSKPEIIQ 557


>BC036023-1|AAH36023.1|  970|Homo sapiens polo-like kinase 4
           (Drosophila) protein.
          Length = 970

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = -3

Query: 300 NYQANKHLPNSSTIDHAIPVKHLEYKHLDLKHGIKRHQIKRIKSNFNTGRSRITVSIKPN 121
           N Q N HL  ++  D   P +  +  H DL+    ++     K   N+  S    S+K  
Sbjct: 482 NLQINAHLRKTTEYDSISPNRDFQ-GHPDLQKDTSKNAWTDTKVKKNSDASDNAHSVKQQ 540

Query: 120 HTSVYINYVHNKCTYVQ 70
           +T  Y+  +H+K   +Q
Sbjct: 541 NTMKYMTALHSKPEIIQ 557


>AB006972-1|BAB69958.1|  970|Homo sapiens Sak protein.
          Length = 970

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = -3

Query: 300 NYQANKHLPNSSTIDHAIPVKHLEYKHLDLKHGIKRHQIKRIKSNFNTGRSRITVSIKPN 121
           N Q N HL  ++  D   P +  +  H DL+    ++     K   N+  S    S+K  
Sbjct: 482 NLQINAHLRKTTEYDSISPNRDFQ-GHPDLQKDTSKNAWTDTKVKKNSDASDNAHSVKQQ 540

Query: 120 HTSVYINYVHNKCTYVQ 70
           +T  Y+  +H+K   +Q
Sbjct: 541 NTMKYMTALHSKPEIIQ 557


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,498,197
Number of Sequences: 237096
Number of extensions: 2036647
Number of successful extensions: 3426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3426
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)