Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m12
         (794 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54360-1|CAA38244.1| 1377|Drosophila melanogaster protein ( Dros...    29   5.5  
U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus interr...    29   5.5  
BT024198-1|ABC86260.1|  857|Drosophila melanogaster RE55588p pro...    29   5.5  
AE014135-3|AAF59373.2| 1397|Drosophila melanogaster CG2125-PA pr...    29   5.5  
AY113223-1|AAM29228.1|  532|Drosophila melanogaster AT09365p pro...    29   9.7  
AE014296-2744|AAN11753.2|  532|Drosophila melanogaster CG32158-P...    29   9.7  

>X54360-1|CAA38244.1| 1377|Drosophila melanogaster protein (
            Drosophila ciD (cubitusinterruptus Dominant) locus mRNA.
            ).
          Length = 1377

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 34   ILCKVNALTSKILHVGTFIMNVVYVDACMVWL 129
            I+C   A  + ++H+ T+   + YV +C  W+
Sbjct: 1304 IVCDTQASNTSVMHLDTYQRTLEYVQSCQNWM 1335


>U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus interruptus
            dominant proteinprotein.
          Length = 1397

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 34   ILCKVNALTSKILHVGTFIMNVVYVDACMVWL 129
            I+C   A  + ++H+ T+   + YV +C  W+
Sbjct: 1305 IVCDTQASNTSVMHLDTYQRTLEYVQSCQNWM 1336


>BT024198-1|ABC86260.1|  857|Drosophila melanogaster RE55588p
           protein.
          Length = 857

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 34  ILCKVNALTSKILHVGTFIMNVVYVDACMVWL 129
           I+C   A  + ++H+ T+   + YV +C  W+
Sbjct: 765 IVCDTQASNTSVMHLDTYQRTLEYVQSCQNWM 796


>AE014135-3|AAF59373.2| 1397|Drosophila melanogaster CG2125-PA
            protein.
          Length = 1397

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 34   ILCKVNALTSKILHVGTFIMNVVYVDACMVWL 129
            I+C   A  + ++H+ T+   + YV +C  W+
Sbjct: 1305 IVCDTQASNTSVMHLDTYQRTLEYVQSCQNWM 1336


>AY113223-1|AAM29228.1|  532|Drosophila melanogaster AT09365p
           protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 412 HCFFHFVFSNPYFSCLRTRIMDFLFLFGSCTILLFYVFIILHNNICNETYSVDF 573
           HC  H ++ N     L   I+D +FLF       F + +I H++    TY +DF
Sbjct: 21  HCAIHRIYRNE--EALLRYIIDSIFLFA------FMLALIFHSHQTEATYRLDF 66


>AE014296-2744|AAN11753.2|  532|Drosophila melanogaster CG32158-PA,
           isoform A protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 412 HCFFHFVFSNPYFSCLRTRIMDFLFLFGSCTILLFYVFIILHNNICNETYSVDF 573
           HC  H ++ N     L   I+D +FLF       F + +I H++    TY +DF
Sbjct: 21  HCAIHRIYRNE--EALLRYIIDSIFLFA------FMLALIFHSHQTEATYRLDF 66


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,278,932
Number of Sequences: 53049
Number of extensions: 631225
Number of successful extensions: 1464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)