Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m12
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   10.0 

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 166 IRFNSFNLMSFN 201
           IRF SF+L++FN
Sbjct: 139 IRFKSFSLLNFN 150


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 529 ILHNNICNETYSVDFHV 579
           I H N+   +++VDFHV
Sbjct: 68  IQHYNVDEYSHTVDFHV 84


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 100 VYVDACMVWLNGDCNS*SPSIEIRFNSFN 186
           +YVD  M  ++GD N    +   R N++N
Sbjct: 111 IYVDVIMNHMSGDRNDAHGTGNSRANTYN 139


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 267 MNSASVYLLGNFNELYQGNIS 329
           MN ++VYLLG+  E  Q N S
Sbjct: 1   MNESAVYLLGSEEEGNQLNRS 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,879
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)