Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m09
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    29   1.0  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   2.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   4.1  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   5.5  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       25   9.6  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 71  FSCASKTSRRIRITLLIKSFV-TLFYAD 151
           FS  S T  RIRI  L+ +F+ TL YAD
Sbjct: 169 FSLISSTKSRIRIVTLLTNFLLTLLYAD 196


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 174 LFT*AHLRRRLTLKIIKDYLRVQRDDYLFFAQKSILYSSNISFCNLEQ 317
           +FT     R +TL + KD   +Q  D LF+A   +L +  +   +L++
Sbjct: 636 IFTTPSRVRSITLLLPKDLANIQPSDLLFYAVLLVLINGKLVLLSLKK 683


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 441 LDGTAKLFLKSIGRAKDYPTLKGVL 515
           +DG  +LF +S+GRA+   T  G++
Sbjct: 537 IDGQVQLFFESVGRAEGCATCLGIV 561


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 204 LTLKIIKDYLRVQRDDYLFFAQKSILY 284
           L+L ++KD L +Q+ + L+F+ +++ Y
Sbjct: 231 LSLSLMKDLLSLQKREDLYFSSRTLAY 257


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 639 GRVDDAALMGYVIDGINNPEF 701
           G VDD   +GY +  I NPEF
Sbjct: 51  GLVDDLEHLGYDVKLIQNPEF 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,390
Number of Sequences: 5004
Number of extensions: 60987
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)