Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m09
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical ...    30   1.7  
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass...    29   3.9  

>AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.7 protein.
          Length = 252

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +2

Query: 98  RIRITLLIKSFVTLFYADLL*RLVKIIYLSSLKKK----TYFENHKGLFTSSTRRLSFFC 265
           +IR+T+++ + +T    +L+  +V   ++  + K     T+F    GL T       +F 
Sbjct: 150 KIRLTIILVTLITTITLNLIDLVVAAFFIQKINKSISESTWFYVSCGLLTVIPLLFGYFV 209

Query: 266 TKIYTIFIQ 292
            KI+  F+Q
Sbjct: 210 AKIFFKFVQ 218


>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform a protein.
          Length = 1633

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 27/108 (25%), Positives = 48/108 (44%)
 Frame = +3

Query: 255  LFFAQKSILYSSNISFCNLEQSMTPFTGDDTYPISEFFDESEDVADLMK*TKVERSIYAK 434
            + + QKS   SSN+S    +         +    SEF   +E  A ++K T VER   + 
Sbjct: 1192 MVYLQKSESSSSNLSGAETKMKHIQRQSSEAR-FSEFKQVAESCAVMIKNTGVERGSTSS 1250

Query: 435  KLLDGTAKLFLKSIGRAKDYPTLKGVLIEDFGPKANSAKVHKKLISRR 578
             + +   ++  ++I R  +    K  +IE    +A+  K+ +K   RR
Sbjct: 1251 TVAEAATEVIEETIIRVDEQLEKKTTVIET--EQASEVKMREKGEERR 1296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,179
Number of Sequences: 27780
Number of extensions: 317675
Number of successful extensions: 887
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)