Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m06
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.78 
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    29   1.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   3.1  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   7.2  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    25   9.6  
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    25   9.6  

>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 639 LGGVFRFFDRYR*PEEPEKH-SCCEDGS--CAW 550
           +G V R +D  R P +PE+  +CC+ G   C W
Sbjct: 42  IGNVSRIYDGIRVPPKPEEPLNCCQSGCAICVW 74


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 188 NISRNYKPLMDPDRGLLFQNRHDHKIICPDPQQDPGQNTTKTR 60
           NI ++YKP   P  G      +D  ++CP  Q+  G + +K +
Sbjct: 162 NIKQSYKPPGPPKSGFTRSFNNDTLMVCPRCQEPLGTSKSKEK 204


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 796 VNVIVTPKFNVPFCRISIIFYINLS 722
           V+V+    FN+PF  I I FYI  S
Sbjct: 482 VSVVKRVAFNIPFLLICIFFYIQSS 506


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 314 YIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYKPLMD 156
           YI   H++ SEN+A F++ K    PR   L    +R   +   +S+  +PL+D
Sbjct: 466 YIRIGHKMGSENYAAFYQVK----PRLSTLTNGSFR--MILRAVSQTLRPLLD 512


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 610 SIKESKYSSQVTNGNS-LRSASTPGGYS 690
           S++ S+++SQVTNG + L      GG+S
Sbjct: 179 SVRASRFTSQVTNGKAELLHIPVVGGHS 206


>SPCC576.03c |tpx1||thioredoxin peroxidase
          Tpx1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 25 YISTWVYLGEYILVFVVFCP 84
          Y   WV+LG Y L F   CP
Sbjct: 30 YKGKWVFLGFYPLDFTFVCP 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,599,481
Number of Sequences: 5004
Number of extensions: 81342
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)