Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m06
(808 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034296-1|AAH34296.1| 233|Homo sapiens chromosome 4 open readi... 171 3e-42
AY349359-1|AAQ56723.1| 250|Homo sapiens unknown protein. 155 1e-37
AK128642-1|BAC87545.1| 156|Homo sapiens protein ( Homo sapiens ... 58 4e-08
BC007288-1|AAH07288.1| 534|Homo sapiens Unknown (protein for IM... 31 3.7
AY235683-1|AAP13542.1| 1067|Homo sapiens PIAS-like protein hZimp... 31 3.7
AL391665-1|CAI40993.2| 1067|Homo sapiens zinc finger, MIZ-type c... 31 3.7
AB033050-1|BAA86538.2| 997|Homo sapiens KIAA1224 protein protein. 31 3.7
>BC034296-1|AAH34296.1| 233|Homo sapiens chromosome 4 open reading
frame 22 protein.
Length = 233
Score = 171 bits (416), Expect = 3e-42
Identities = 95/228 (41%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Frame = -3
Query: 677 GVEA-DRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTR 501
G++A D + F +E++LDS I DL L AR + LGYR G+ + ++F R
Sbjct: 6 GLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEAR 65
Query: 500 RAVINEIVYPTVKAY--VLVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGF 327
+A I EI +A L S G + D F LA+RE NR G L S+IFIR G
Sbjct: 66 KAAI-EIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSSVIFIRDRNSHGQ 124
Query: 326 EISGYIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYKPLMDPDR 147
EISGYIDYAHRL +E++ +F KK L PR D+ +Y+W SN S NY+ + D
Sbjct: 125 EISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIADNPE 184
Query: 146 GLLFQNRHDHKIICPDPQQDPGQNTTKTRIYSPRYTQVEIYDHVVRRK 3
GLLF+ + D KI+ DP+ PG N+T+ I + Y Q I+DH+ RRK
Sbjct: 185 GLLFRYKRDRKILNVDPKAQPGDNSTRITILTELYIQAVIFDHISRRK 232
>AY349359-1|AAQ56723.1| 250|Homo sapiens unknown protein.
Length = 250
Score = 155 bits (377), Expect = 1e-37
Identities = 96/245 (39%), Positives = 130/245 (53%), Gaps = 20/245 (8%)
Frame = -3
Query: 677 GVEA-DRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTR 501
G++A D + F +E++LDS I DL L AR + LGYR G+ + ++F R
Sbjct: 6 GLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEAR 65
Query: 500 RAVINEIVYPTVKAY--VLVSEGVVIDDPFSRELAIRERANRVGILQ------------- 366
+AVI EI +A L S G + D F LA+RE NR G L
Sbjct: 66 KAVI-EIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSLNQQETDAAHTLK 124
Query: 365 ----SIIFIRHFTKGGFEISGYIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGT 198
S+IFIR G EISGYIDYAHRL +E++ +F KK L PR D+ +Y+W
Sbjct: 125 KQLASVIFIRDGNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADI 184
Query: 197 VRSNISRNYKPLMDPDRGLLFQNRHDHKIICPDPQQDPGQNTTKTRIYSPRYTQVEIYDH 18
SN S NY+ + D GLLF+ + D KI+ DP+ PG N+T+ I + Y Q I+DH
Sbjct: 185 AVSNSSPNYQVIADNPEGLLFRYKRDRKILNVDPKAQPGDNSTRITILTELYIQAVIFDH 244
Query: 17 VVRRK 3
+ RRK
Sbjct: 245 ISRRK 249
>AK128642-1|BAC87545.1| 156|Homo sapiens protein ( Homo sapiens
cDNA FLJ46801 fis, clone TRACH3032044. ).
Length = 156
Score = 58.0 bits (134), Expect = 4e-08
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Frame = -3
Query: 677 GVEA-DRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTR 501
G++A D + F +E++LDS I DL L AR + LGYR G+ + ++F R
Sbjct: 6 GLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEAR 65
Query: 500 RAVINEIVYPTVKAY--VLVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRH 345
+A I EI +A L S G + D F LA+RE NR G L + + H
Sbjct: 66 KAAI-EIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSAGVQWHH 118
>BC007288-1|AAH07288.1| 534|Homo sapiens Unknown (protein for
IMAGE:3347864) protein.
Length = 534
Score = 31.5 bits (68), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 566 SSQQLCFSGSSGQRYLSKNLNTPPKSRMAIAYDPLPLPG 682
+ Q FSGSS Y N+N PP+ Y P+PG
Sbjct: 476 NGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPG 514
>AY235683-1|AAP13542.1| 1067|Homo sapiens PIAS-like protein hZimp10
protein.
Length = 1067
Score = 31.5 bits (68), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 566 SSQQLCFSGSSGQRYLSKNLNTPPKSRMAIAYDPLPLPG 682
+ Q FSGSS Y N+N PP+ Y P+PG
Sbjct: 476 NGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPG 514
>AL391665-1|CAI40993.2| 1067|Homo sapiens zinc finger, MIZ-type
containing 1 protein.
Length = 1067
Score = 31.5 bits (68), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 566 SSQQLCFSGSSGQRYLSKNLNTPPKSRMAIAYDPLPLPG 682
+ Q FSGSS Y N+N PP+ Y P+PG
Sbjct: 476 NGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPG 514
>AB033050-1|BAA86538.2| 997|Homo sapiens KIAA1224 protein protein.
Length = 997
Score = 31.5 bits (68), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 566 SSQQLCFSGSSGQRYLSKNLNTPPKSRMAIAYDPLPLPG 682
+ Q FSGSS Y N+N PP+ Y P+PG
Sbjct: 406 NGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPG 444
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,998,723
Number of Sequences: 237096
Number of extensions: 2996456
Number of successful extensions: 6813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6812
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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