Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m06
(808 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-1635|AAF54909.1| 233|Drosophila melanogaster CG8138-PA... 116 5e-26
BT011401-1|AAR96193.1| 241|Drosophila melanogaster AT24369p pro... 105 7e-23
AE014134-940|AAF52266.1| 241|Drosophila melanogaster CG14013-PA... 105 7e-23
AE014134-941|AAF52267.1| 238|Drosophila melanogaster CG14017-PA... 98 1e-20
AE014134-425|AAF51245.1| 235|Drosophila melanogaster CG3528-PA ... 87 4e-17
AY075219-1|AAL68086.1| 299|Drosophila melanogaster AT16536p pro... 29 7.5
AF237864-1|AAF44120.1| 313|Drosophila melanogaster Bcl-2-like p... 29 7.5
AE013599-1336|AAF58628.3| 299|Drosophila melanogaster CG8238-PA... 29 7.5
>AE014297-1635|AAF54909.1| 233|Drosophila melanogaster CG8138-PA
protein.
Length = 233
Score = 116 bits (278), Expect = 5e-26
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 9/230 (3%)
Frame = -3
Query: 665 DRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTRRAVIN 486
D + F ++EYL S + D R L T+ LGYR + E EF + +
Sbjct: 3 DFSIAKFNNYQEYLHSFTTVEDFRYLPFHKTVITLTKLGYREHRTFYEEDEFLNVKKQVE 62
Query: 485 EIVYPTVKAYVLVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGFEISGYID 306
+++ PTV A + S+ DP LA RE N + +IIF+ + GF SGYID
Sbjct: 63 QLLNPTVSAQIYYSQYFKGTDPALWALAEREHGNVQQEISTIIFLEISGRSGFSKSGYID 122
Query: 305 YA-----HRLVSEN---WAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYKPLMDPD 150
+ +R N W F +K+L P+ D+ +Y W+ + +N + NY + P+
Sbjct: 123 FEASLRNYRFKGPNAVDWKAVFEERKLLKPQPSDIVFYDWKTRKIFANDNDNYTVVAHPE 182
Query: 149 RGLLFQNRHDHKIICPDPQQDP-GQNTTKTRIYSPRYTQVEIYDHVVRRK 3
GL+F ++ DHK I +++P N ++ I S Y + +YDH VR+K
Sbjct: 183 HGLMFAHKGDHKNIPVTTKKNPFSSNVRRSMIRSNLYGFIILYDHHVRKK 232
>BT011401-1|AAR96193.1| 241|Drosophila melanogaster AT24369p
protein.
Length = 241
Score = 105 bits (252), Expect = 7e-23
Identities = 70/236 (29%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Frame = -3
Query: 677 GVEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTRR 498
G D +L F + +Y+ S + D R L + +T+ LGYR + +E+ R
Sbjct: 5 GKSVDFSVLEFDNYNDYISSFATVTDHRYLGNQNTIKTIVQLGYRTTKIPYTAEEYEKRV 64
Query: 497 AVINEIVYPTVKAYVLVSE--GVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGFE 324
+ E + P + L S+ DP E RE N IL +I+F + G E
Sbjct: 65 DLALEAIRPKLAHVGLFSDLLSPTNRDPVLLEFKARELLNLNKILSTIVFTSYIHMDGSE 124
Query: 323 ISGYID--------YAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYK 168
ISGYID + + +W F+ + L P L Y + R+ V+ S NY+
Sbjct: 125 ISGYIDLDMSWRNCFREAIKHTDWRGVFQGRSRLKPMPHHLSYSNPRYNVVKYTDSDNYQ 184
Query: 167 PLMDPDRGLLFQNRHDHKIICPDPQQD-PGQNTTKTRIYSPRYTQVEIYDHVVRRK 3
+ D GL+F +R DHK+I Q + +N ++ +YSP++ V YDH VR+K
Sbjct: 185 VMHDHHFGLMFMHRGDHKMISVGGQFNIYSRNAKRSMVYSPKFGYVVFYDHFVRKK 240
>AE014134-940|AAF52266.1| 241|Drosophila melanogaster CG14013-PA
protein.
Length = 241
Score = 105 bits (252), Expect = 7e-23
Identities = 70/236 (29%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Frame = -3
Query: 677 GVEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTRR 498
G D +L F + +Y+ S + D R L + +T+ LGYR + +E+ R
Sbjct: 5 GKSVDFSVLEFDNYNDYISSFATVTDHRYLGNQNTIKTIVQLGYRTTKIPYTAEEYEKRV 64
Query: 497 AVINEIVYPTVKAYVLVSE--GVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGFE 324
+ E + P + L S+ DP E RE N IL +I+F + G E
Sbjct: 65 DLALEAIRPKLAHVGLFSDLLSPTNRDPVLLEFKARELLNLNKILSTIVFTSYIHMDGSE 124
Query: 323 ISGYID--------YAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYK 168
ISGYID + + +W F+ + L P L Y + R+ V+ S NY+
Sbjct: 125 ISGYIDLDMSWRNCFREAIKHTDWRGVFQGRSRLKPMPHHLSYSNPRYNVVKYTDSDNYQ 184
Query: 167 PLMDPDRGLLFQNRHDHKIICPDPQQD-PGQNTTKTRIYSPRYTQVEIYDHVVRRK 3
+ D GL+F +R DHK+I Q + +N ++ +YSP++ V YDH VR+K
Sbjct: 185 VMHDHHFGLMFMHRGDHKMISVGGQFNIYSRNAKRSMVYSPKFGYVVFYDHFVRKK 240
>AE014134-941|AAF52267.1| 238|Drosophila melanogaster CG14017-PA,
isoform A protein.
Length = 238
Score = 97.9 bits (233), Expect = 1e-20
Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 8/245 (3%)
Frame = -3
Query: 713 MAMAEKKNEYPPGVEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANG 534
M +++K+ G A + + YL+S + + D R L + + L
Sbjct: 1 MEDSQRKHAGSKGFRALENRKQDIAYNHYLNSFVKLEDRRYLPNDNVIHQLVPLRAAVGT 60
Query: 533 DTLSEKEFYTRRAVINEIVYPTVKAYVLVSEGVVIDDPFSRELAIRERANRVGILQSIIF 354
++ +F NE+ + + SE V +DP + L RE+ N + +I+F
Sbjct: 61 IVMTPTQF-------NEVHFSPLGTCFYFSENNVPNDPLTMALLEREKLNATKTISTIVF 113
Query: 353 IRHFTKGGFEISGYIDYAHRL--------VSENWAQFFRSKKMLWPRDKDLGYYHWRHGT 198
+ GF ISGYID H L S WA F ++ L P +DL + +W +G
Sbjct: 114 VSTRDSKGFNISGYIDLEHSLRRYKTAGSKSHPWADIFAGRRRLEPNHQDLSFINWSNGR 173
Query: 197 VRSNISRNYKPLMDPDRGLLFQNRHDHKIICPDPQQDPGQNTTKTRIYSPRYTQVEIYDH 18
V SN S NYK + D +GL F ++ D ++ + K I SP++ +YDH
Sbjct: 174 VHSNDSDNYKVIPDAVKGLCFAHKGDGSMLSIEKYITEEHPLCKF-IESPKHGYTVVYDH 232
Query: 17 VVRRK 3
+RRK
Sbjct: 233 YIRRK 237
>AE014134-425|AAF51245.1| 235|Drosophila melanogaster CG3528-PA
protein.
Length = 235
Score = 86.6 bits (205), Expect = 4e-17
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Frame = -3
Query: 656 LLPFVTWEEYLDSLIDIADLRNLRSTAAARTVA--ALGYRANGDTLSEKEFYTRRAVINE 483
L+ F +++Y+DS I I D R L + R + A G G+ L+ ++FY R+
Sbjct: 3 LINFNHYQDYVDSFITIQDTRYLGNKEIQRNLIQNACGKNCLGNLLTREQFYQRKEKELV 62
Query: 482 IVYPT-VKAYVLVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGFEISGYID 306
++ P ++ L + + D ++ A RE+ + +++++ +K G EIS ++D
Sbjct: 63 LLKPRGLRGLQLFGDYLNNKDEVLQQFANREKKLLEKQISTVVYLVMRSKKGLEISSFLD 122
Query: 305 YAHRLVS---EN------WAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYKPLMDP 153
L EN W F + L P + L Y+ W V N S N++ L
Sbjct: 123 LEQSLRESRFENSTSCVDWRAIFEGRTKLRPSNLHLSYFDWHQNRVSFNNSDNFRVLNKR 182
Query: 152 DRGLLFQNRHDHKIICPDPQQD--PGQNTTKTRIYSPRYTQVEIYDHVVRR 6
LL ++ DHKI C + D +N ++ +SP Y V +DH++RR
Sbjct: 183 PHSLLLKHVGDHKIFCVNASCDCEHSKNVSRKTYFSPIYGYVIFFDHIIRR 233
>AY075219-1|AAL68086.1| 299|Drosophila melanogaster AT16536p
protein.
Length = 299
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 384 QGRDFTVHYIHSTLHKRGLRN--IRLHRLRTSLGLGELGSVLQI 259
QGR HYI L + GL N + L R+R+ LG +G V +
Sbjct: 92 QGRCLCGHYIKRRLRRSGLFNKKLGLQRIRSILGSTSMGIVRDV 135
>AF237864-1|AAF44120.1| 313|Drosophila melanogaster Bcl-2-like
protein BUFFY protein.
Length = 313
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 384 QGRDFTVHYIHSTLHKRGLRN--IRLHRLRTSLGLGELGSVLQI 259
QGR HYI L + GL N + L R+R+ LG +G V +
Sbjct: 106 QGRCLCGHYIKRRLRRSGLFNKKLGLQRIRSILGSTSMGIVRDV 149
>AE013599-1336|AAF58628.3| 299|Drosophila melanogaster CG8238-PA
protein.
Length = 299
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 384 QGRDFTVHYIHSTLHKRGLRN--IRLHRLRTSLGLGELGSVLQI 259
QGR HYI L + GL N + L R+R+ LG +G V +
Sbjct: 92 QGRCLCGHYIKRRLRRSGLFNKKLGLQRIRSILGSTSMGIVRDV 135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,956,514
Number of Sequences: 53049
Number of extensions: 908933
Number of successful extensions: 2310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2299
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -