Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m06
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    35   0.079
AF125964-7|AAD14750.1|  350|Caenorhabditis elegans Hypothetical ...    29   3.0  
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    29   5.2  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       29   5.2  
AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -3

Query: 284 ENWAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYKPLMDPDRGLLFQNRHDHKIIC 105
           ENWA  F ++   +  D      HW H  V  ++   +K   DP++G+ + +    +   
Sbjct: 216 ENWAVEFTTENQPYYVDHANRRTHWVHPFVHESLKPGWKKFFDPEKGVFYYHEEMKRTQY 275

Query: 104 PDPQ-QDPGQNTTKTRIYSPRYTQVEIYDHVVRRK 3
             P   +P   T    + S     +    H++  K
Sbjct: 276 EHPGISNPIFRTESVNVASRSQVDLNANLHIIEEK 310


>AF125964-7|AAD14750.1|  350|Caenorhabditis elegans Hypothetical
           protein W03G1.2 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 185 ISRNYKPLMD--PDRGLLFQNRHDHKIICPDPQQDPGQNTTKTRIYSPRYTQVEIYDHV 15
           I    K LMD  P +    +N+ D  ++C +P      NT+K ++ +      + YDHV
Sbjct: 141 IDAKSKLLMDRVPKKPYRLKNKPDGMMLCDEPSTFYRTNTSKKKLKTSLLPVEDSYDHV 199


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
           protein 40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -3

Query: 674 VEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYT--- 504
           V  + R  P +T        ++ AD+     TAAAR  A + +  NG+ +   E++    
Sbjct: 328 VSVEVRAPPRITTRPTTKVAVETADVELECGTAAARPEARVNWYKNGEAIIGSEYFVIEP 387

Query: 503 RRAVINEIVYPTVKAYVLVSEGVVIDDPFSRELAI 399
            R  I  +V      Y  ++E  V  +  S +L +
Sbjct: 388 NRLRILGVVRADQAIYQCIAENDVGSEQASAQLLV 422


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -3

Query: 674 VEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYT--- 504
           V  + R  P +T        ++ AD+     TAAAR  A + +  NG+ +   E++    
Sbjct: 328 VSVEVRAPPRITTRPTTKVAVETADVELECGTAAARPEARVNWYKNGEAIIGSEYFVIEP 387

Query: 503 RRAVINEIVYPTVKAYVLVSEGVVIDDPFSRELAI 399
            R  I  +V      Y  ++E  V  +  S +L +
Sbjct: 388 NRLRILGVVRADQAIYQCIAENDVGSEQASAQLLV 422


>AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical
           protein C49A9.10 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 606 R*PEEPEKHSCCEDG--SCAWL 547
           R P EPE   CC++G  SC WL
Sbjct: 26  RPPMEPEPGLCCQEGCESCVWL 47


>Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical
           protein F53A2.9 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/59 (32%), Positives = 21/59 (35%)
 Frame = +2

Query: 542 LCNQAQLPSSQQLCFSGSSGQRYLSKNLNTPPKSRMAIAYDPLPLPGGIRSFFQPSPCF 718
           L    Q PS Q       SG RY   +L T  K R+       P P  I     P P F
Sbjct: 311 LMETTQWPSQQMHMMDALSGLRYQIVDLKTDVKLRILEKQKEFPKPAQIFQITGPRPGF 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,828,466
Number of Sequences: 27780
Number of extensions: 456420
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)