Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m06
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.36 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.4  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 323 ISGYIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHG 201
           + G +D+ +   +E+ A         WPR K+LG     HG
Sbjct: 118 LGGDLDWKYYTTNESHACLSTGGSCYWPRGKNLGGTTLHHG 158


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 74  TTKTRIYSPRYTQVEIYD 21
           T+ T +Y PRYT+  I D
Sbjct: 224 TSSTFVYDPRYTKYTIND 241


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 46 LGEYILVFVVFCPGSC 93
          LG  +L+  VFC G C
Sbjct: 8  LGRILLISAVFCVGLC 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,339
Number of Sequences: 438
Number of extensions: 5760
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)