Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m05
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   2.6  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   3.4  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   4.5  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   6.0  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 37  QSLFKALIFT-LSLIQWIKLIKYINYCIDGAEINLQTGIKMIVIFHFTFII 186
           Q LF A I   LS    +  +  +N  ++GA I L T  + I +  F FII
Sbjct: 445 QRLFSACIEVYLSYCNTLIFLHRLNESVEGANICLDTARRAINVLKFFFII 495


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 533 FNWYALSVFEDVRCFRCNEIY 595
           F + AL  F +  CF+CN++Y
Sbjct: 128 FEYSALKQFGEKMCFQCNQVY 148


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 330 ALLTPIKMLSLSSIAKEFTPFTLN 401
           +LLT +    LS   +EFTPFTLN
Sbjct: 687 SLLTVLLTKCLSLFDEEFTPFTLN 710


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 293 TWIPLVTLVFQNGAFDTYQNVIALVHSKGIHSVHAKRSQMPGR 421
           +W  ++  V  +G    +QNV+ L+ S G++  H  + ++ G+
Sbjct: 288 SWEKVLVCVVIDGRNTVHQNVLDLLASIGVYQPHIAKGRVNGK 330


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 754 PLLKPRKAVSSRRLCIYTRHYQ 819
           P+ KP + V  RRL I   HYQ
Sbjct: 658 PITKPSEPVPMRRLTIVCNHYQ 679


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 PFTLNVPKCLAEAFSGSKTYRLLFSSIA 470
           P  +N+P  +  AFS    + LLF+ +A
Sbjct: 114 PIFINMPSMIVSAFSHQSGWHLLFNMVA 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,149
Number of Sequences: 5004
Number of extensions: 66359
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)