Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m05
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0475 - 3818121-3820565                                           30   2.1  
11_01_0675 - 5508815-5511277                                           30   2.7  
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     30   2.7  
12_02_0312 + 17395716-17398112                                         29   3.6  
05_01_0476 - 3896314-3898725                                           29   4.7  
12_02_0783 + 23125786-23126037,23126867-23127784                       29   6.3  
04_03_0922 + 20834195-20836603                                         29   6.3  
04_03_0916 + 20794240-20794246,20794585-20796545                       28   8.3  
04_01_0014 - 231228-233179,233522-233714                               28   8.3  

>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 46  FKALIFTLSLIQWIKLIKYINYCIDGAE 129
           F+A + ++ LIQ I L+K I +C +G E
Sbjct: 551 FRAEVSSIGLIQHINLVKLIGFCCEGDE 578


>11_01_0675 - 5508815-5511277
          Length = 820

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  FKALIFTLSLIQWIKLIKYINYCIDG 123
           F+A + +L LIQ I L+K I +C +G
Sbjct: 565 FRAEVSSLGLIQHINLVKLIGFCCEG 590


>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  FKALIFTLSLIQWIKLIKYINYCIDG 123
           F+A + ++ +IQ I L+K I YC +G
Sbjct: 591 FRAEVSSIGIIQHINLVKLIGYCCEG 616


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = -3

Query: 757 EDVMYLAVSNDGGTMYIATWPQNRVHKLSNDGQKQEIFAPIPNGHGLTVDTRNNIYFVAT 578
           E++M L  S   G+M + T   +++  +    +  E+   +P+   + V  R        
Sbjct: 284 EELMNLLPSGRSGSMILITTRLSKIASVLKTIEPYEV-PKLPHEECMKVFARYAFKGQKA 342

Query: 577 KTSYILKNGESVPIKIKGLPTDKMT-GIYVSRSD 479
           K + +LK GES+  K  GLP    T G  +S  D
Sbjct: 343 KDTELLKIGESIVQKCDGLPLAVRTLGSLLSMED 376


>05_01_0476 - 3896314-3898725
          Length = 803

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  FKALIFTLSLIQWIKLIKYINYCIDG 123
           F+A + ++ LIQ I L+K I +C +G
Sbjct: 551 FRAEVSSIGLIQHINLVKLIGFCCEG 576


>12_02_0783 + 23125786-23126037,23126867-23127784
          Length = 389

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 282 FCCGHGFLS*PLYFKMALLTPIKML--SLSSIAKEFTPFTLNVPKCLAEAFSGSKTYRLL 455
           + C H  L  P+Y  +AL  P++ +  SLS ++   +P    V      A  G+   RLL
Sbjct: 193 YVCNHRTLIDPVYVSIALDRPVRAVSYSLSRVSDLLSPIGATVRLARDRAHDGAAMARLL 252


>04_03_0922 + 20834195-20836603
          Length = 802

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 46  FKALIFTLSLIQWIKLIKYINYCID 120
           F+A + ++ LIQ I LIK I +C D
Sbjct: 544 FRAEVSSIGLIQHINLIKLIGFCCD 568


>04_03_0916 + 20794240-20794246,20794585-20796545
          Length = 655

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  FKALIFTLSLIQWIKLIKYINYCIDG 123
           F+A + ++ +IQ I L+K I +C +G
Sbjct: 390 FRAEVSSIGIIQHINLVKLIGFCCEG 415


>04_01_0014 - 231228-233179,233522-233714
          Length = 714

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 46  FKALIFTLSLIQWIKLIKYINYCIDG 123
           F+A + ++ LIQ I L+K I +C  G
Sbjct: 456 FRAEVSSIGLIQHINLVKLIGFCCQG 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,681,678
Number of Sequences: 37544
Number of extensions: 378089
Number of successful extensions: 1027
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)