Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m05
(858 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95701-1|CAA64997.1| 449|Homo sapiens GATA-6 DNA binding protei... 32 3.1
U66075-1|AAC50941.1| 449|Homo sapiens hGATA-6 protein. 32 3.1
D87811-1|BAA22621.1| 449|Homo sapiens GATA-6 protein. 32 3.1
AK223547-1|BAD97267.1| 595|Homo sapiens GATA binding protein 6 ... 32 3.1
U86782-1|AAC51866.1| 310|Homo sapiens 26S proteasome-associated... 31 7.1
BC066336-1|AAH66336.1| 310|Homo sapiens proteasome (prosome, ma... 31 7.1
AC009299-2|AAX88940.1| 154|Homo sapiens unknown protein. 31 7.1
BC125123-1|AAI25124.1| 952|Homo sapiens ubiquitin specific pept... 30 9.4
AF153604-1|AAD41086.1| 981|Homo sapiens ubiquitin-specific prot... 30 9.4
AF106069-1|AAD52099.1| 952|Homo sapiens deubiquitinating enzyme... 30 9.4
AF013990-1|AAG28973.1| 902|Homo sapiens ubiquitin C-terminal hy... 30 9.4
AB011101-1|BAA25455.2| 952|Homo sapiens KIAA0529 protein protein. 30 9.4
>X95701-1|CAA64997.1| 449|Homo sapiens GATA-6 DNA binding protein
protein.
Length = 449
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 676 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 795
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 254 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 294
>U66075-1|AAC50941.1| 449|Homo sapiens hGATA-6 protein.
Length = 449
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 676 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 795
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 254 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 294
>D87811-1|BAA22621.1| 449|Homo sapiens GATA-6 protein.
Length = 449
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 676 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 795
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 254 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 294
>AK223547-1|BAD97267.1| 595|Homo sapiens GATA binding protein 6
variant protein.
Length = 595
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 676 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 795
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 400 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 440
>U86782-1|AAC51866.1| 310|Homo sapiens 26S proteasome-associated
pad1 homolog protein.
Length = 310
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 613 VDTRNNIYFVATKTSYILKNGES-VPIKIKGLPTDKMTGIYVSRSDEVYAMDEN 455
VDT +Y + +LK+G + VP+++ GL + Y R +V+AM ++
Sbjct: 25 VDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQS 78
>BC066336-1|AAH66336.1| 310|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 14 protein.
Length = 310
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 613 VDTRNNIYFVATKTSYILKNGES-VPIKIKGLPTDKMTGIYVSRSDEVYAMDEN 455
VDT +Y + +LK+G + VP+++ GL + Y R +V+AM ++
Sbjct: 25 VDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQS 78
>AC009299-2|AAX88940.1| 154|Homo sapiens unknown protein.
Length = 154
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 613 VDTRNNIYFVATKTSYILKNGES-VPIKIKGLPTDKMTGIYVSRSDEVYAMDEN 455
VDT +Y + +LK+G + VP+++ GL + Y R +V+AM ++
Sbjct: 25 VDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQS 78
>BC125123-1|AAI25124.1| 952|Homo sapiens ubiquitin specific
peptidase 15 protein.
Length = 952
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 532 IKGLPTDKM--TGIYVSRSDEVYAMDEN 455
+ G+P DKM T IY R ++AMDEN
Sbjct: 483 LSGIPADKMIVTDIYNHRFHRIFAMDEN 510
>AF153604-1|AAD41086.1| 981|Homo sapiens ubiquitin-specific
protease homolog protein.
Length = 981
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 532 IKGLPTDKM--TGIYVSRSDEVYAMDEN 455
+ G+P DKM T IY R ++AMDEN
Sbjct: 512 LSGIPADKMIVTDIYNHRFHRIFAMDEN 539
>AF106069-1|AAD52099.1| 952|Homo sapiens deubiquitinating enzyme
protein.
Length = 952
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 532 IKGLPTDKM--TGIYVSRSDEVYAMDEN 455
+ G+P DKM T IY R ++AMDEN
Sbjct: 483 LSGIPADKMIVTDIYNHRFHRIFAMDEN 510
>AF013990-1|AAG28973.1| 902|Homo sapiens ubiquitin C-terminal
hydrolase protein.
Length = 902
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 532 IKGLPTDKM--TGIYVSRSDEVYAMDEN 455
+ G+P DKM T IY R ++AMDEN
Sbjct: 433 LSGIPADKMIVTDIYNHRFHRIFAMDEN 460
>AB011101-1|BAA25455.2| 952|Homo sapiens KIAA0529 protein protein.
Length = 952
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 532 IKGLPTDKM--TGIYVSRSDEVYAMDEN 455
+ G+P DKM T IY R ++AMDEN
Sbjct: 483 LSGIPADKMIVTDIYNHRFHRIFAMDEN 510
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,004,882
Number of Sequences: 237096
Number of extensions: 2070762
Number of successful extensions: 4160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4160
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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