Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m05
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    32   0.45 
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.2  
Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z81119-9|CAB03339.1|  502|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 847 QLNDIVYLATDNGVYKYKDDGSIQLYAALGEDVMYLAV 734
           ++ND++ L+ D GV+   DD S++LY     D  + ++
Sbjct: 33  RINDVILLSKDEGVWTASDDRSVRLYLKRDNDQFWPSI 70


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +1

Query: 637 LARKFPVFVRHLTV-YERDSV--ATSLCT*FRRHSKQPSTLRPLLKPRKAVSSRR---LC 798
           +AR+F + +R  +   ER +V  A      F + S+Q    +P  +PRKAVSSRR     
Sbjct: 711 MARQFAILIREESYGLERQAVPVADGAAQYFEQLSEQ-MLYQP--RPRKAVSSRRHHYTQ 767

Query: 799 IYTRHYQWPNKQCHL 843
            +  H Q P+ Q HL
Sbjct: 768 PHPHHQQMPHHQPHL 782


>AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical
           protein T08B1.1 protein.
          Length = 591

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 536 NWYALSVFEDVRCFRCNEIYIVSSVNCQTMAVRYWRENFLFLSVI*QFMNAILWPRRYV 712
           +W A SV + V CF    +Y V      TM V +    F  + V     NA  WP  Y+
Sbjct: 184 SWIAFSVIQGVNCF----LYGVIETTSLTMMVEFTSNKFRVIMV-----NAFQWPIAYM 233


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 463  DENSNLYVLEPENASARHLGTFSVNGVNSFAMDESDNILIGVKSA 329
            D  +N+YV + ++ S R L   S   +NS A+D    ++    SA
Sbjct: 1402 DRQANIYVAKAKDTSTRTLIVNSTGTINSLAVDPIKRLIFWTTSA 1446


>Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical
           protein F47H4.2 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 757 LLKPRKAVSSRRLCIYTRHYQWPNKQCHLIVD 852
           +L  RK     R  + TR +++PNKQ  +++D
Sbjct: 367 ILSIRKVCKGLRSFVDTRCFEFPNKQLSIVID 398


>Z81119-9|CAB03339.1|  502|Caenorhabditis elegans Hypothetical
           protein T10H4.11 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +3

Query: 342 PIKMLSLSSIAKEFTPFTLNVPKCLAEAFSGSKTYRLLFSSIA*TSSERLT*IPVILSVG 521
           P + L +  + K+  PF +    CL E+ + ++ Y +L + +   + E +  +P I ++ 
Sbjct: 422 PERFLEVEGLDKKMIPFGIGKRACLGESLAKAELYLVLGNMLLDYNLEPVGDVPKIQTI- 480

Query: 522 RPLILIGTLSPF 557
            P  L+    PF
Sbjct: 481 TPFGLLKRPPPF 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,573
Number of Sequences: 27780
Number of extensions: 363183
Number of successful extensions: 961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)