Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m04
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   0.59 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   2.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   5.5  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    23   7.2  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   9.6  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    23   9.6  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    23   9.6  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   9.6  

>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 0.59
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 232 AFSFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVG 125
           A  FLQ++ +T+EL+K      + +  FP +S F+G
Sbjct: 131 AQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIG 166


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 180 TAEAPLCCENSQVKVCS 130
           T+E P CC N +  VC+
Sbjct: 281 TSEKPSCCSNGKSTVCA 297


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -1

Query: 160 LRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYFYE*MKVYKNYK*NELYL 5
           LR   S  + +GG       T  K +  +  Q  F+E  K +  ++  ++YL
Sbjct: 512 LRTCKSRCIEIGGEQFSGFLTNIKPFEAVTFQKLFFEVGKGFSYFRPEQVYL 563


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 10  TVRFIYNFYRLSFIRKNNSVN 72
           T++ +YNFYR  ++ + +  N
Sbjct: 561 TLQRLYNFYRFQYLEEQSLYN 581


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  IYNFYRLSFIRKNNSVNKLY 81
           +YN+  L FI++N  +  LY
Sbjct: 145 LYNYRILYFIKRNLGIGSLY 164


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 132 NKLSLGNFRSKVGLRQSCLRNSMVCRTFCK 221
           NKLS  +      L    ++   +C T+CK
Sbjct: 237 NKLSFASVEQLEKLLDQIVKRMKICFTYCK 266


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 208 RQTMELRKHDCRSPTLLRKFPSESL 134
           R   +LR H+    TLL+ FPS  L
Sbjct: 281 RAFCDLRDHNVTLITLLKAFPSVQL 305


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 173 KPHFAAKIPK*KFVRRW*H*NQQCNRKQRL 84
           K  F+  +PK K  +RW H     N  Q+L
Sbjct: 194 KAIFSLNVPKKKRSQRWIHREHLFNMPQKL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,941
Number of Sequences: 5004
Number of extensions: 17119
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)