Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m04
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 26 3.6
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133 26 3.6
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718... 26 3.6
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62... 26 4.8
07_03_0182 - 14815467-14815488,14815604-14815943,14816860-148172... 25 6.3
06_02_0213 + 13087707-13088423 25 6.3
04_03_0893 - 20602008-20602361,20602455-20602604,20602723-206028... 25 6.3
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455... 25 8.3
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 25 8.3
07_01_0157 + 1109499-1111022 25 8.3
06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531 25 8.3
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814... 25 8.3
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 223 FLQNVRQTMELRKHDCRSPTLLRKFPSESLFV 128
F +N T+ DCRSP+ ++P E LFV
Sbjct: 237 FFRNGLPTLVAYPADCRSPSCYMRYPGE-LFV 267
>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
Length = 474
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 140 KFVRRW*H*NQQCNRKQRLPYNLLTELFLRINES 39
KF+R W H ++ R RLP ++ LRI +S
Sbjct: 33 KFLRDWRHKKERTARPDRLPLPKSSKKGLRIEDS 66
>02_02_0149 -
7182562-7182891,7182989-7183575,7185334-7185433,
7185547-7185563,7185928-7186369,7186501-7186629
Length = 534
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 184 HDCRSPTLLRKFPSESLFVGGNTKINSA 101
HDC+SP + R ++ + GN K A
Sbjct: 132 HDCKSPIIHRDIKPTNILLDGNLKAKIA 159
>02_01_0087 +
623174-623421,623576-623693,624266-624588,625267-625551,
625643-625823,625964-626119
Length = 436
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 17 VLFIIFIDFHLFVKITLLINYMVVFASGCTVDFSVTT 127
+L ++ +D F+ + L+N+ ++F CT+ S+ T
Sbjct: 110 ILALLHLDTPWFMLFSQLVNWFMLFCITCTLSNSMET 146
>07_03_0182 -
14815467-14815488,14815604-14815943,14816860-14817220,
14817232-14817666,14818042-14818149
Length = 421
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 169 PTLLRKFPSESLFVGGNTKINSATGSKD 86
PT+LR P + G +++SATG K+
Sbjct: 73 PTVLRGAPDNEVQAGRVIRVSSATGLKE 100
>06_02_0213 + 13087707-13088423
Length = 238
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 163 LLRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYF 56
++ PS S G NT I+S S D H++ + YF
Sbjct: 203 MIHHVPSSSY--GWNTSIDSKPNSSDAHVVGARRYF 236
>04_03_0893 -
20602008-20602361,20602455-20602604,20602723-20602835,
20603105-20603377,20603746-20603886,20604638-20604974
Length = 455
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 201 PWSYANMTAEAPLCCENSQVKVCSSVVTLKSTVQPEAKTTI*F 73
PWS C +S + S V+TL + PEA + F
Sbjct: 306 PWSQYQKIGALSRQCASSMEAMASYVITLTKSQYPEANPELSF 348
>12_01_0561 +
4550119-4550265,4550716-4550791,4551601-4551668,
4551951-4552039,4552136-4552313,4553096-4553229,
4553307-4553520,4553601-4553785,4553930-4554025,
4554105-4554231
Length = 437
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 169 GFGSHVCVTP 198
G+GSH CVTP
Sbjct: 60 GYGSHACVTP 69
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -2
Query: 264 CSRLKDVNELKLSAFYKTCDKPWSYANMTA 175
C + + L F + C K W YAN A
Sbjct: 8 CGKPNEDANAHLQQFLEICTKQWFYANRAA 37
>07_01_0157 + 1109499-1111022
Length = 507
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 168 PLCCENSQVKVCSS 127
P+CC++ KVCSS
Sbjct: 289 PMCCKHRSQKVCSS 302
>06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531
Length = 177
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 101 CTVDFSVTTDEQTFTWEFSQQSGAS 175
C + S D F W FSQQ+ A+
Sbjct: 113 CILPESAFADTDLFGWHFSQQAAAN 137
>03_05_0979 -
29380899-29381063,29381157-29381210,29381451-29381456,
29382167-29382280,29382379-29382422,29382540-29382615
Length = 152
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 261 SRLKDVNELKLSAFYKTCDKPWSYANMTAEAPL 163
S + LK S C PW N +AE+PL
Sbjct: 85 SAIASAPPLKFSTKINLCLPPWVQENDSAESPL 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,836,045
Number of Sequences: 37544
Number of extensions: 95796
Number of successful extensions: 258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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