Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m04
(268 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 28 1.0
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 28 1.0
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 28 1.0
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 27 1.4
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 27 1.4
AF016442-1|AAB65918.1| 340|Caenorhabditis elegans Hypothetical ... 27 1.4
Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 26 4.2
U23168-8|AAC38809.2| 153|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z30317-3|CAA82969.1| 930|Caenorhabditis elegans Hypothetical pr... 25 5.6
U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical... 25 5.6
Z50742-2|CAA90616.1| 491|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 25 7.4
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 25 7.4
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 25 9.7
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 148 PSESLFVGGN-TKINSATGSKDYHI 77
PSESLFVGG I + GSK Y +
Sbjct: 20 PSESLFVGGRVVTIETDNGSKRYEL 44
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 148 PSESLFVGGN-TKINSATGSKDYHI 77
PSESLFVGG I + GSK Y +
Sbjct: 20 PSESLFVGGRVVTIETDNGSKRYEL 44
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 148 PSESLFVGGN-TKINSATGSKDYHI 77
PSESLFVGG I + GSK Y +
Sbjct: 18 PSESLFVGGRVVTIETDNGSKRYEL 42
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 264 CSRLKDVNELKLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVC--SSVVTLKSTVQ 100
C +NE + S+ +TC Y + A AP+ C+ S + C S V TVQ
Sbjct: 94 CQFAPSMNECQ-SSCQQTCQTSSCYTQIAAPAPVQCQPSCMPACEQSCVAPAPVTVQ 149
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 264 CSRLKDVNELKLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVC--SSVVTLKSTVQ 100
C +NE + S+ +TC Y + A AP+ C+ S + C S V TVQ
Sbjct: 95 CQFAPSMNECQ-SSCQQTCQTSSCYTQIAAPAPVQCQPSCMPACEQSCVAPAPVTVQ 150
>AF016442-1|AAB65918.1| 340|Caenorhabditis elegans Hypothetical
protein K12B6.3 protein.
Length = 340
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 196 ELRKHDCRSPTLLRKFPSESLFVGGNTKIN 107
E R HDC+ T LRKF L G K++
Sbjct: 137 ETRTHDCKDLTRLRKFFEAVLAYTGYAKVS 166
>Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical
protein C32H11.2 protein.
Length = 332
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 14 FVLFIIFIDFHLFVKITLLINYMVVFAS--GCTVDFSVTTDEQTF 142
FV IIF+ + IT +++Y++ F + C V F +T+ F
Sbjct: 101 FVFLIIFLSMCMLYYITQVLHYLISFLAIRKCFVYFFPSTERTIF 145
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 22 IYNFYRLSFIRKNNSVNKLYGSLCFRLH 105
IYN +S +RK +++ ++ + FRLH
Sbjct: 612 IYNGIGMSIMRKMSALQEIKAEVAFRLH 639
>U23168-8|AAC38809.2| 153|Caenorhabditis elegans Hypothetical
protein B0228.6 protein.
Length = 153
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -1
Query: 226 SFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYF 56
S + V +T +++K ++ L + ++++ V N K+ SKD HI+ + F
Sbjct: 7 STFEFVSETGQIKKRGSKTSELKQNETTDAVVVN-NEKVKKRRNSKDSHIVLAKEIF 62
>Z30317-3|CAA82969.1| 930|Caenorhabditis elegans Hypothetical
protein T16G12.6 protein.
Length = 930
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 231 LSAFYKTCDKPWSYANMTAEAPLCCENSQVKVCSSVVTLKSTVQPEAKT 85
L Y+ K W + + S +K+CS ++ L S+V E ++
Sbjct: 771 LQLIYQVVRKNWKMIRKFPDPSMAAFQSSLKICSFII-LNSSVPTEVRS 818
>U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical
protein K09E2.2 protein.
Length = 596
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 223 FLQNVRQTMELRKHDCRSPTLLRKFPSESLF 131
FLQ++R +H +++K+P E L+
Sbjct: 168 FLQSIRVVQHFEQHTTELHNVMKKYPLEFLY 198
>AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical
protein Y47D3A.16 protein.
Length = 580
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 255 LKDVNELKLSAFYKTCDKPWSYANMTAEAP 166
L D E+K AF+KT D YA EAP
Sbjct: 332 LSDAEEIKSHAFFKTTDWNLVYARQ-LEAP 360
>Z50742-2|CAA90616.1| 491|Caenorhabditis elegans Hypothetical
protein K09A11.2 protein.
Length = 491
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 8 IQFVLFIIFIDFHLFVKIT 64
+ FV+FIIF FH + K++
Sbjct: 6 LAFVIFIIFYVFHFYWKVS 24
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 47 LFVKITLLINYMVVFASGCTVDFS 118
+F T+ +NY VV S C +DFS
Sbjct: 197 IFPNGTVWMNYRVVVESPCEMDFS 220
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 47 LFVKITLLINYMVVFASGCTVDFS 118
+F T+ +NY VV S C +DFS
Sbjct: 197 IFPNGTVWMNYRVVVESPCEMDFS 220
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 261 SRLKDVNELKLSAFYKTC-DKPWSYANMTAEAPLCCENSQVKVCSS 127
S LK +L + K+C + W + T E +CC N+ C++
Sbjct: 746 SSLKHSAKLVPCSATKSCPSQQWCHYGETKETTVCCPNAVDDPCTA 791
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,389,142
Number of Sequences: 27780
Number of extensions: 95995
Number of successful extensions: 305
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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