Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m03
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    31   0.016
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
 Frame = +3

Query: 237 RMVRKVRTDHRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTE-----D 401
           RM R  R D  D  D            RMD        D   RMD   RM R +     D
Sbjct: 443 RMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVDTMDTMDTMDRMDRMDRMDRMDRMDRMD 502

Query: 402 TVQGTDRTAHRDHMD 446
           T+  TD+ +  D MD
Sbjct: 503 TMDRTDKMSRIDRMD 517



 Score = 25.0 bits (52), Expect = 0.82
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 318 RMDHTGKGIDTDRKARMDHKARMAR-----TEDTVQGTDRTAHRDHMD 446
           RMD        DR  RMD   R+ R     T DT+  TD+ +  D MD
Sbjct: 398 RMDTMDTMDRIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMD 445


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 758 LVKLTKNNTKFSSNKPASKQNQRK 687
           L+  +KNNT    +K  +K+N  K
Sbjct: 506 LINFSKNNTIVDISKLVNKRNNAK 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,733
Number of Sequences: 438
Number of extensions: 3065
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)