Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m02
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical...    31   1.2  
U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched fami...    28   6.5  

>AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical
           protein Y111B2A.5a protein.
          Length = 434

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -1

Query: 404 VTKIGDQMALLLHGIKGTKEEVNKVGTEVEEVEKMAIGIKVLAGQ 270
           V ++ DQ+   +  +K  KEE +K+  ++E+ EK  I ++VL  Q
Sbjct: 302 VKEMEDQLEAKVKALKEAKEESSKLEKKLEKAEKERIALEVLEEQ 346


>U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical
           protein ZK177.8b protein.
          Length = 553

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 356 GTKEEVNKVGTEVEEVEKMAIGIKVLAGQAQETGIIMVMGVLGQGMDGTT 207
           G  E V KVG +++E+ +     + + G+ ++    ++  VLG+G+D  T
Sbjct: 398 GAAEVVKKVGQKMKEILEQMDDTEEMDGKLKDIQFTVMHSVLGRGLDDKT 447


>U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical
           protein ZK177.8a protein.
          Length = 587

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 356 GTKEEVNKVGTEVEEVEKMAIGIKVLAGQAQETGIIMVMGVLGQGMDGTT 207
           G  E V KVG +++E+ +     + + G+ ++    ++  VLG+G+D  T
Sbjct: 432 GAAEVVKKVGQKMKEILEQMDDTEEMDGKLKDIQFTVMHSVLGRGLDDKT 481


>Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical
           protein F37B12.1 protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 198 VAYCCSIHSLTQNSHYHYYSSFLGLTSQYFDSNCHFFHLLHLRSNLVDFLLGSLDSMKE- 374
           V Y C   S T  SH  +  SFLG T + F  N   F  + L S L  FL   L    E 
Sbjct: 235 VVYTCRFFSPTATSHSSHSLSFLG-TCRVFWLNFTVFLSVSLLS-LSIFLSYDLSKRLEM 292

Query: 375 EGHLIPNFGYYSNF 416
           +  L+ N G++  F
Sbjct: 293 KRELLGNLGFFPTF 306


>U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched family
           protein 2 protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 279 QYFDSNCHFFHLLHLRS-NLVDFLLGSLDSMKEEGHLIP 392
           +YFD+N H F+    RS  LV   +  +D++KE   L P
Sbjct: 572 EYFDNNVHHFNFQWQRSARLVKNFVFGVDAIKETSTLSP 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,688
Number of Sequences: 27780
Number of extensions: 262285
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)