Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m01
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = -2

Query: 522 FTNNCPKVRLPALIIVD*YVCSVQYDSEWYCHIMVAVL 409
           FTNNC  VR   L  +D  VC      EW  HI+V VL
Sbjct: 101 FTNNC-FVRRENLRCLD--VCGKPLPLEWQLHIIVKVL 135


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 563 DCQWNTKSIIRFSDLPIIVQKSDCRL***STNMYVQFNMILNG 435
           D  W + S IRF DLP  ++    ++     NM V F+ ++NG
Sbjct: 234 DTSWESHSAIRFKDLPGTLETLGSKV-KEIINMDVSFDKLMNG 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,806,113
Number of Sequences: 27780
Number of extensions: 359615
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)