Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m01
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 278 IINELHLF*YLKRIKVWVLYLFKLNYDEPRLTSC 379
           I N L    Y++++  WV +  K  +   R+ SC
Sbjct: 100 IENHLKQLGYVQKLDTWVPHELKEKHLTQRINSC 133


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 395 WSLDYSTATIM*QYHSESY*TEHTY*STIIKAGNLTFGQLLVNQKNELLTLYSIGS 562
           WS   +T T    Y S++Y T H++ ST+    N+   ++  +QK  + ++ S+ S
Sbjct: 362 WSSLDNTNTNDQDYSSQNYLTVHSFPSTL----NIPSVKIDEDQKCSIESITSVNS 413


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -2

Query: 693 IDMSIQIDLNIIVSFKEYG 637
           +D+++ +DL+I  + +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,841
Number of Sequences: 438
Number of extensions: 4760
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)