Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l24
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    30   0.31 
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   2.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   2.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    26   5.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   5.0  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   6.6  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   6.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   6.6  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   8.7  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   8.7  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 101 NFSFAKFDEKRNMQLIALLY--KLHYVFYLLHNNMISLKITVFFLNNEDMQLLFPKTVLM 274
           NF F   + K N   IA LY  +LH  F L HN+        FFL      +L  KTVL 
Sbjct: 349 NFRFHTVEPKNN---IAKLYDPRLHLFFSLRHNSFFESYFIYFFLAK---LILLKKTVLS 402

Query: 275 L 277
           L
Sbjct: 403 L 403


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 131 RNMQLIALLYKLHYVFYLLHNNMISLKITVFFLNNEDMQLL 253
           +NM+ + +++ L  V ++ +  +  LK T F L+NE + L+
Sbjct: 277 KNMRQLLIVHTLGKVGFVANETLTLLKATEFGLSNEMLSLI 317


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 168 CNLYNNAISCMLRFSSNLAKLKFSSNPQIILELRDLYQS 52
           CN       CM +  SNL++LK SS    ++ L+  + S
Sbjct: 286 CNYETEITDCMEKLQSNLSELK-SSRKSSLISLKSFWLS 323


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 384 IIKHQS*FM*IPNPELSIDSYEDTKAKSKTGC---NSSVNIKTVLGNSNCMSSLF 229
           I+K  S F  + N +L  D YE  +AK+ +     N SV  KT L  +N  SSLF
Sbjct: 15  IVKEISSFGSLTNIDLHTDPYEKVEAKALSRSRLKNQSVK-KTDLRITNDYSSLF 68


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 21  MKRARDVGT*YFDKDPSIPILSVDLTR 101
           MKR R+    Y +  P +PI+  DL R
Sbjct: 55  MKRCRETIAPYLELKPEVPIVYTDLIR 81


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 346 IRNSHKSGL---MFYYLYKLHCYTLSIYSLLLT 435
           +  SH+S L   +FY +Y L CYT +I  L L+
Sbjct: 338 VLTSHESRLSKRVFYSVYVLACYTSTIVGLPLS 370


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 136 VTLFIELGEAEVLVKSTDNIGIEGSLSKYYVPTSRARFIRPC 11
           +T +       V +K+ D I +   LSK  +P S   FIR C
Sbjct: 134 ITAYSLYAAVSVGLKTEDIIAVLDRLSKTPIPPSIVDFIRAC 175


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 188 HNNMISLKITVFFLNNEDMQLLFPKTVLMLTL 283
           H  ++   +  FFL N D+Q++   T+L L L
Sbjct: 652 HFELLINNLKKFFLTNNDLQIIQGCTILFLRL 683


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 600 RLNWSSNVDTRKTFSVSFTHICR 532
           R  WS+ +D+ ++F VSF  IC+
Sbjct: 495 RNEWSNFLDSVQSFPVSFHSICK 517


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 54  FDKDPSIPILSVDLTRTSASPS 119
           F K PS P+L+ D   T A P+
Sbjct: 415 FKKQPSYPVLTSDFEITDAGPN 436


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 382 YLYKLHCYTLSIYSLLLTHSR 444
           +LY+LH +T  +YSL   H++
Sbjct: 207 FLYELHGHTSFVYSLTYIHNQ 227


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 605 LFA*IGRQMLIRERHFLFLLLIYVDCHIVGDK 510
           +FA +G  M +  R    L + Y DC  +GD+
Sbjct: 50  VFAPLGAGMFVASRRVKELRIDYTDCMNIGDE 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,677
Number of Sequences: 5004
Number of extensions: 49568
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)