Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l17
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   201   9e-53
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   3.5  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   8.0  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  201 bits (490), Expect = 9e-53
 Identities = 96/197 (48%), Positives = 126/197 (63%), Gaps = 1/197 (0%)
 Frame = -2

Query: 708 YCGVGE-HVAGREIAECHARACIYSGMDYDGSNAEVMNGSWEFQVGPTLGIKAADDIWIG 532
           YCGVG   V  R+I E H +AC+Y+G++  G NAEVM   WE+QVGP  GI+  D +W+ 
Sbjct: 163 YCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMS 222

Query: 531 RYLLNRIAEHFDVIISFHPKPMGDGHAGIGCHHNFSTKKMRADQGVTEIKRICKILCDQH 352
           R+LL+RIAE F V ISFHPKP+     G GCH N STK  RA+ G+  I+   +    +H
Sbjct: 223 RFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRH 282

Query: 351 EKIIKSYDLKDGEDNKKRLVGKFETSSYDSCRVGISDRSASIRIQKKVISEGKGYFEDRR 172
           ++ I  Y    G+DN  RL G+ ET S D    G++DR AS+RI + V   G GYFEDRR
Sbjct: 283 KEHIAVY----GDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRR 338

Query: 171 PAGNCDPYMVCGVIAKT 121
           PA + DPY+V G+I +T
Sbjct: 339 PASSIDPYLVTGIITET 355


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -3

Query: 242 IEVRRYEFRKKLYQ----KAKDTLKIEDLQA--TVIRTWFVA*LLKHVFELNLLEETTKK 81
           + +  Y+  KK Y     K +  LK E+L++  T    + VA   KH F LNL       
Sbjct: 678 VMLAEYKVNKKFYAIKVLKKEAILKNEELESLKTEKHVFEVANKEKHPFLLNLFASFQTS 737

Query: 80  STEYFVFDGLL 48
           +  YFV + +L
Sbjct: 738 TRVYFVMEYIL 748


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 627 YDGSNAEVMNGSWEFQVGPTLGI 559
           YD ++ EV+   W F  G  LG+
Sbjct: 506 YDANSREVITSRWAFHTGRILGM 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,608
Number of Sequences: 5004
Number of extensions: 65613
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)