Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l16
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   3.8  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    27   3.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   6.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 552 IIVSVKVQISKKLLEIIYLFFNYKIVLHVIIYRNIDQSSILINDETSNIEDLENTV 719
           I++SV V  +  L+   +++ +YK +L  I++R    +  L  D+ +N     NTV
Sbjct: 249 ILLSVTVVFTFSLILFPWIYMDYKTLLPQILHRVFPFARGLWEDKVANFWCTLNTV 304


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 454 LTNREVPGNGS--GSTFSADVKDIEESMIPVD*DADDVEAGSVL 329
           LT R +  NG    +  +  +KDIE  M+ +  D + + AGS+L
Sbjct: 207 LTKRPINANGDLRYTPSNYSLKDIENLMVIISQDHNGLNAGSIL 250


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +3

Query: 654 IDQSSILINDETSNIEDLENTVEEDNVDCETEV 752
           ++QS++L+N   + +  LEN + +  V+ + ++
Sbjct: 428 LEQSNVLLNQYDARVRTLENELSQAGVNLQEQI 460


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 330 STEPASTSSASQSTGIIDSSISLTSAENV 416
           S+ PAS+SSA+ ST +  SS+  +S+ ++
Sbjct: 20  SSIPASSSSAAASTSLSSSSVIPSSSSSM 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,416
Number of Sequences: 5004
Number of extensions: 38678
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)