Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l16
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    30   2.3  
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25...    28   6.9  
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23...    28   6.9  
04_03_0378 - 15125779-15126120,15126142-15126408                       28   9.2  

>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 537 YNFFSIIVSVKVQISKKLLEIIYLFFNYKIVLHVI--IYRNIDQSSILIND 683
           Y F+  ++S  V +S  +L  I +F NY + LH+I  +Y       I I D
Sbjct: 180 YTFYLELISDLVHLSLYMLFFIAIFLNYGVPLHLIRELYETFRNFRIRIAD 230


>12_01_0029 +
           248725-248769,248870-249074,250040-250128,250237-250315,
           250429-250556,250764-250862,250953-251061,251301-251380,
           251464-251691,251768-251833,251970-252086,252538-252735,
           252847-252963,253056-253115,253228-253314,253419-253502,
           253623-253757,253837-253899,253979-254083,254174-254286,
           254374-254626,254715-254851,254970-255248,255352-256354,
           256450-256935,257023-257193,257285-257470,257820-257942,
           258024-258134,258225-258395
          Length = 1708

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 645 YRNIDQSSILINDETSNIEDLENTVEEDNVDCETEV 752
           Y +++ S +++N    N+  LEN + ED ++C  E+
Sbjct: 443 YESLELSRLVVNQNKKNL--LENWLAEDKLECSEEL 476


>11_01_0030 +
           233285-233329,233439-233643,234637-234725,234834-234912,
           235048-235175,235383-235481,235572-235680,235920-235999,
           236083-236310,236387-236452,236589-236705,237142-237339,
           237451-237567,237660-237719,237832-237918,238023-238106,
           238233-238367,238446-238508,238588-238692,238781-238893,
           238981-239233,239322-239458,239577-239855,239958-240960,
           241054-241539,241627-241797,241890-242075,242426-242548,
           242630-242740,242834-243004
          Length = 1708

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 645 YRNIDQSSILINDETSNIEDLENTVEEDNVDCETEV 752
           Y +++ S +++N    N+  LEN + ED ++C  E+
Sbjct: 443 YESLELSRLVVNQNKKNL--LENWLAEDKLECSEEL 476


>04_03_0378 - 15125779-15126120,15126142-15126408
          Length = 202

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 543 FFSIIVSVKVQISK---KLLEIIYLFFNYKIVLHVIIYRNIDQSSILINDETSNIE 701
           FF +   V+VQ +K    + E+  +  ++K + H++ Y+ +     ++ND+   +E
Sbjct: 39  FFMVYGEVEVQATKVWPSVWEVTRVLEHFKAMPHLVRYKKLTDLEGILNDQLHRVE 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,543
Number of Sequences: 37544
Number of extensions: 191372
Number of successful extensions: 404
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)