Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l14
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 31 0.26
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 31 0.26
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.7
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 5.7
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 10.0
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 25 10.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 10.0
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po... 25 10.0
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 25 10.0
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 10.0
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -1
Query: 813 YDPTTNTWAPVPDMY---NPRSNFAVEVIDDMIFAIGG-FNGVTTIYHVECYDEKTNEWY 646
Y P + W+ V NPR+ A V++ +++ GG + T + + + + WY
Sbjct: 273 YHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGGRASDGTFLNDLYAFRLSSKHWY 332
Query: 645 EATDM 631
+ +D+
Sbjct: 333 KLSDL 337
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -1
Query: 762 RSNFAVEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYEATDMNIY---RSALSACVIM 592
R+ D ++ GG +G + CY K + W + + R+ +A V+
Sbjct: 243 RAGHVAFTFSDKLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVE 302
Query: 591 GLPNVY 574
G+ V+
Sbjct: 303 GILYVF 308
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 765 PRSNFAVEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYE 643
PRSN +V ++ IF GG N + + +D +T W E
Sbjct: 247 PRSNHSVTLVQGKIFVHGGHNDTGPLSDLWLFDLETLSWTE 287
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 5.7
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +1
Query: 64 INTNAKN*SKIDLQINDCYNF-------INCFVHHDYNLITRNIRCPNIKPQYSYNTFWN 222
IN+N N +++ N+CY F +N ++ H N I CP + P+ NT +
Sbjct: 1118 INSNRNNVFYLNIPGNECYLFEAPSVLAMNEWI-HSLNFNAAMITCPPL-PENITNTEYG 1175
Query: 223 WILFTMVLSRNEHIAGY 273
W +L+R E A Y
Sbjct: 1176 W---GYILTRAEKKAYY 1189
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/66 (19%), Positives = 29/66 (43%)
Frame = -1
Query: 588 LPNVYDYIHKHRERLMEEKRQKILLSETARQGQHRPTLPDVHLIEDNDDMLEQLGLMENQ 409
L ++ I HR R + + L + + + L ++ E DD + + G++
Sbjct: 636 LGHIESSIENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSESEDDNIPRPGIVPFY 695
Query: 408 DANNDA 391
+ NN++
Sbjct: 696 NENNES 701
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 229 LFTMVLSRNEHIAGYPEVNQILMLRFAKLPVHRFI 333
+F ++LS N H + + + Q + RF +H FI
Sbjct: 393 IFIILLSSNSHYSQFWAIFQAFVWRFLHSIIHAFI 427
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 705 NGVTTIYHVECYDEKTNEWYEATDMNIYRSALS 607
+G T H CY + + W++A D I +S+L+
Sbjct: 295 SGSVTYGHYLCYRLQDDIWWKANDSLITKSSLN 327
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 333 NKPMNWKLCKTQHQDLIYLRISSNVFVSAQDHGKQ 229
++P N LC Q +I +R+ S+ F S QD G++
Sbjct: 743 HRPYNSLLCAFQSLKIILIRLCSSSF-SIQDAGRR 776
>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +3
Query: 474 VAWVCVVLDEPSPTAGSSVASPP*VALDAYVCNRTRSEGP*SHMPITPNDICSYL 638
VAWV V D P P + P V + T G +PI D S L
Sbjct: 168 VAWVAPVTDSPKPPKDRITLTLPVVTHAQAIAFVTTGAGKKDILPIVIEDFTSKL 222
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 263 MCSFLLRTMVNNIQFQNVLYEYCGLMLGQRMFRVI 159
+ S L + + I + NV++ +CG M G +F ++
Sbjct: 499 LASLLFNFLTSIIGYGNVMWIFCGCMWGGILFTLL 533
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 822 GEVYDPTTNTWAPVPDMYNPRS-NFAVEVIDDM 727
G ++DP T W PD+Y+ R N +E ++
Sbjct: 236 GPLHDPNTVMWLLRPDIYSGRKVNVQIETQSEL 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,496
Number of Sequences: 5004
Number of extensions: 62678
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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