Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l14
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    24   2.0  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   3.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   3.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   3.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 300 QHQDLIYLRISSNVFVSAQDHGKQYP 223
           Q+QD +Y    S+  ++AQ H + YP
Sbjct: 48  QYQDTLYSGTRSSESLTAQAHHRLYP 73


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 573 DYIHKHRERLMEEKRQKILLSETARQGQHRPTLPDVH 463
           D + K  + + +   QKI ++E    G  R   PD H
Sbjct: 27  DQVEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDH 63


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 88  LSNNYNYNNNYNNYNKHNYNKLYYN 112


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 321 LSNNYNYNNNYNNYNKHNYNKLYYN 345


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 LDYNHDEQNS**NYNSHLFVNLFYS 86
           L  N++  N+  NYN H +  L+Y+
Sbjct: 321 LSNNYNYNNNYNNYNKHNYNKLYYN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,887
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)