Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l11
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 35 0.017
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 28 1.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.4
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.4
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 26 7.8
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 7.8
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 7.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 7.8
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 34.7 bits (76), Expect = 0.017
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 490 RTVFLYETSPFPVVMSEIAIHGFKEVSDLSVCLKDIISRMMTHSVKVIGDFNRCIH 323
+ + LYE FP + S+ F E D + C+ D+I R + ++GD ++CI+
Sbjct: 465 KLLHLYE---FPNIFSKYDYILFDEAQDFTPCMVDLIYRQKHARIVIVGDAHQCIY 517
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 28.3 bits (60), Expect = 1.5
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Frame = -1
Query: 793 FIWNRYRY-IFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTLCLALGYQRVQRLP 617
F++N Y ++ +HD K + S + + G + + + +L L QR+
Sbjct: 282 FVFNEYCVKSSRLALHDNKDIEYSQQPASAIFMYGSYILTSHPDNSLIL----QRLYSTN 337
Query: 616 EKLQVHF--ETLENLKKYSASKLFECQKQQQVGGNCSHES-QDLERTVFLYETSPFPVVM 446
+L++ F L ++ SKLF C + V NC+ DL T Y++ P+++
Sbjct: 338 NELRIKFLGRLLGHVCGVQISKLFSCGRIVSVSKNCADICVWDLHDT--NYQSIVSPLML 395
Query: 445 SEIAIHGFKEVSD 407
+ IH K VSD
Sbjct: 396 TCTNIHN-KPVSD 407
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.5
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +1
Query: 445 TSPPETVMFHTGTQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLDSLTSQNVLVAFLVI 624
TS P + + S+ S S+S ++ S +S +T L S T +
Sbjct: 584 TSSPSSTSLSISSSSTSSTFSSASTSSPSSISSS---ISSSSTILSSPTPSTSSLMISSS 640
Query: 625 SVLSGSRAPSITSRSRRPIAGSL 693
S++SGS + +S S PI+ SL
Sbjct: 641 SIISGSSSILSSSISTIPISSSL 663
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 254 GQSSSGVLFHELKQVFQFRHLNV 322
G S +L HEL++ QFR L++
Sbjct: 207 GHEESSILLHELQRYLQFRPLSI 229
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 143 YIYPVLYSGKLQLKTLLATIKNKLFTKHYNFLIHSADGQSSSGVLFHE 286
Y + +Y G T++ I L TK+ N LIH + + S L HE
Sbjct: 559 YYWTTVYCG---FSTIVTLIFAALLTKNTNLLIHISVARESIEALAHE 603
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 442 RTSPPETVMFHTGTQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLD 582
+ +P E+V+ + SSPDL + S G + PNT D
Sbjct: 486 KLNPSESVVVASEKASSPDLSPKLLPSESQIFDEGIAVTQTPNTLED 532
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 478 GTQSSPDLGSRESSSHRL-AVVSGTRIVSKPNTSLDSLTSQNVLVAFLVISVLSGSRAPS 654
G+ S + +S + +L + ++ +V KPN D + L +VL + P
Sbjct: 94 GSNSPTANEALDSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQ 153
Query: 655 ITSRSRRPIAGSL 693
+ S R+P +G L
Sbjct: 154 LFSHGRKPWSGIL 166
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 514 SSSHRLAVVSGTRIVSKPNTSLDSLTSQNVLVAFLVISVLSGSRAPSITSRSRRPIAGSL 693
S S + RI + NTS++ +TS+ + V + ++ +SGS + T + +G++
Sbjct: 167 SGSSNITTPYSNRITNS-NTSVNDITSKYLSVGTITLTTISGSDLYTSTFPANGTTSGTV 225
Query: 694 RGV 702
V
Sbjct: 226 EVV 228
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 481 TQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLDSLTS 594
T +S S E+S+H + + T IV P+TS +S T+
Sbjct: 45 TTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,345
Number of Sequences: 5004
Number of extensions: 68737
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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