Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l09
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 81 2e-16
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 52 1e-07
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 50 3e-07
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 50 5e-07
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 46 5e-06
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 31 0.14
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 29 0.58
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 27 2.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.3
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 27 3.1
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 27 4.1
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 27 4.1
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 26 5.4
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 26 7.2
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 25 9.5
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 25 9.5
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 80.6 bits (190), Expect = 2e-16
Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 5/270 (1%)
Frame = -3
Query: 796 AGVVVAKGQSXKT-FNIGDEVFFTGDHRRNGSNAQYVALDEVLVGTKPKKLTFEQAAAMP 620
AGVV A G + F +GD V + G+ AQY + LV +K+ + A+A
Sbjct: 66 AGVVAAVGDKVEADFKVGDRVVYLTPF---GAYAQYTNVPTTLVSKVSEKIPLKIASAAL 122
Query: 619 LTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQE 440
L +TAY I + + + D T+++ +AGGVG + QM + + VI TAS +
Sbjct: 123 LQGLTAYTLIEEAYPVKTGD---TVVVHAAAGGVGLLLCQMLRARNVHVIATASTAAKRR 179
Query: 439 FSLQHGTDIVLNHTQDLIPQLVAQGHGNGVDFILVNYDPFPYWDTL---MKAIKPQGRIC 269
++++G +I ++ +DL + +G GVD YD DTL + A++ G +
Sbjct: 180 IAIKNGAEIACSY-EDLTKVVADYTNGKGVD---AAYDSVGI-DTLSSSLDALRNGGTMV 234
Query: 268 LIVDSSGLVDLRPLKDKSVTLVSEMMFTRIKYDTEDKIRHHQILEQISKWLDKGELKHTL 89
++SG +D PLK S + + + Y I H + E L K L + L
Sbjct: 235 SFGNASGAIDAIPLKFLSARCLKFVRPSLFGY-----ITGHAVFEGYVSRLWKEILDNNL 289
Query: 88 TNTLSPI-NAANLREAHRLIEQQGMIGKLV 2
+ I + +EAH IE + GKL+
Sbjct: 290 NIAIHHIFKLSEAKEAHDAIESRATTGKLL 319
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 51.6 bits (118), Expect = 1e-07
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Frame = -3
Query: 574 ISSKDKGRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGTDIVLNHTQ 395
I G T+ I ++G VG +A Q+AK +GL V+G+ E + L G D V N+ +
Sbjct: 155 IGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDSGYDSVFNYKK 214
Query: 394 DLIPQLVAQGHGNGVDFILVNYDPFPYWDTLMKAIKPQGRICLIVDSSGLVDLRPLKDKS 215
+ + + + G+D N D +++ + QGRI S + P + K+
Sbjct: 215 ESPFKALPRLCPKGIDIYFENVGG-ETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKN 273
Query: 214 VTLVSEMMFTRIKYDTEDKIRHH--QILEQISKWLDKGELKH 95
+ +V T + + + + Q E++ K + +G++K+
Sbjct: 274 LGMVLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKY 315
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 50.4 bits (115), Expect = 3e-07
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Frame = -3
Query: 712 NGSNA---QYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIYDRLLI------SSKD 560
+GSNA +Y+ LD LV PK +T QAA +PLT TA + + L + SK+
Sbjct: 90 DGSNAAWREYITLDVNLVYFVPKNITPSQAATLPLTFTTASQGLNQYLGLPLPPTDGSKN 149
Query: 559 KG--RTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGTDIVLNHTQDLI 386
+ +L+ + + VG Q+A + G KVI T S P ++ + G D +++ +
Sbjct: 150 SAQQKWVLVWSGSSSVGQYVVQLAHHAGYKVIATCS-PHNFDWIKKLGADFTVDYHDPNV 208
Query: 385 PQLVAQGHGNGVDFILVNYDPFPYWDTLMKAIK 287
+++ + D + +D + +T A+K
Sbjct: 209 VEIIKKATD---DSVFYGFDAASFPETSTLAVK 238
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 49.6 bits (113), Expect = 5e-07
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Frame = -3
Query: 799 GAGVVVAKGQSXKTFNIGDEV---FFTG----------DHR-----RNGSNAQYVALDEV 674
GAG++ G+ + F GD V FFT H R+G +Y L
Sbjct: 68 GAGIIEKVGEDVEGFEKGDSVVCNFFTNYLDGTPTDFATHSALGGTRDGCFQKYAVLPAH 127
Query: 673 LVGTKPKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMA 494
+ PK L+FE+ A +P +VTA+ ++ K G +L++ + GGV + A Q A
Sbjct: 128 ALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVK-PGNNVLVLGT-GGVSTFALQFA 185
Query: 493 KNLGLKVIGTASRPETQEFSLQHGTDIVLNH 401
G V T+S E EF+ + G +N+
Sbjct: 186 LAAGANVTVTSSSDEKLEFAKKLGATHTINY 216
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 46.4 bits (105), Expect = 5e-06
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = -3
Query: 748 GDEVFFTGDHRRNGSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIYDRLLIS 569
G E+ FT D G++A+Y + E P L+F +AA++ + TAY L
Sbjct: 93 GSELSFTKD----GTHAEYCIIPEKAAVRMPSNLSFTEAASVGVPFTTAY-----LALSR 143
Query: 568 SKDKGRTL-LIINSAGGVGSVASQMAKNLGLKVIGTASR 455
+ KG + L++ + G VGS Q+A++ G KVI T SR
Sbjct: 144 GETKGSDIVLVVGALGAVGSAVCQIAEDWGCKVI-TVSR 181
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 559 KGRTLLIINSAGGVGSVASQMAKNLGLKVIG 467
+GR +LI +AGG+G V +M LG +V G
Sbjct: 4 EGRVVLITGAAGGIGKVLCKMFTELGDRVAG 34
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 29.5 bits (63), Expect = 0.58
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -3
Query: 688 ALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSV 509
+L E L +P+ F+QA +PL++ + I +S + + L NS+G SV
Sbjct: 223 SLQESLHSVEPESPIFQQAPQIPLSNASQQSYINHSSDGASLPQS-SFLNFNSSGKRVSV 281
Query: 508 --ASQMAKNLGLKVIGTASRPE 449
A+Q KNL L + AS P+
Sbjct: 282 SAAAQQHKNLFLPYLPQASLPK 303
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 2.3
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Frame = -3
Query: 556 GRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGT-DIVLNHTQDLIPQ 380
G+ +L I GG+ ++ MA+ LG V + P E + +H + D VLN + I
Sbjct: 78 GKKILDIGCGGGI--LSESMAR-LGASVTAVDASPMAIEVAKKHASLDPVLNGRLEYIHG 134
Query: 379 LVAQGHGNGVDFILVNY--------DPFPYWDTLMKAIKPQGRICLIVDSSGLV 242
V +G F +V P + +LM+ +KP GR+ L S L+
Sbjct: 135 SV-EGSQLPTTFDVVTCMEVLEHVEQPRDFLFSLMEKVKPNGRLVLSTISRTLL 187
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 49 LLNWLH*WVTEYLSMCVSIHLCQAILKFALIFDDV*SYPLYHTLFL 186
LLN H + + C S+ L Q + F + + Y LYH L+L
Sbjct: 2059 LLNLEHRMMLQMAPDCDSLTLLQKLEVFEYVMANTDGYDLYHVLWL 2104
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 278 TLRFDSFH*SIPVWERIIIN*DKIYSISMPLGY*LWNQILCVIKNNVCSMLKTELLCFWT 457
T+ FDSF+ ++PV ++ +SI L LW I C+ +++ L C+++
Sbjct: 195 TIEFDSFNSNVPVTLKLQRQIFLSFSIVYGL-ISLWWAIRCICSRTKLHLVQVCLFCWFS 253
Query: 458 *SCSNH 475
NH
Sbjct: 254 FFILNH 259
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 640 EQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGLKVIGTA 461
E+ + L + E DRL + +K+ L+I+ G+G S + L ++G A
Sbjct: 25 EKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILC--LAHALLGPA 82
Query: 460 SRPETQEF--SLQHGTDIVLN 404
+ E S + G D+V N
Sbjct: 83 YKEGVLELNASDERGIDVVRN 103
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = -3
Query: 286 PQGRICLIVDSSGLVDLRPLKDKSVTLVSEMMFTRIKYDTEDKIRHHQILEQISKWLDKG 107
P +I I + +D P +D +V E +K + DKI+ + +L+ LDK
Sbjct: 235 PDDKIRTISSAVDKLDKLPWEDVRREMVVEK---GLKEEVADKIKEYVLLKGDRSLLDKL 291
Query: 106 ELKHTLTNTLSPINAAN-LREAHRLIEQQGMIGK 8
E L++ S + A N +R +E G++ +
Sbjct: 292 EADSLLSSNSSAVAAFNDMRLLFDYLEAFGVLDR 325
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 229 LKDKSVTLVSEMMFTRIKYDTEDKIRHHQILEQISKWLDKGELKHTLTNTLSPINAAN 56
L DK V L+ E K + +D+ H+ +EQ S + K + TL + I AAN
Sbjct: 589 LADKGVCLIDEFD----KMNDQDRTSIHEAMEQQSISISKAGIVTTLQARCTIIAAAN 642
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 445 QEFSLQHGTDIVLNHTQDLIPQLV 374
++F HGT+ H L+PQ+V
Sbjct: 600 KQFEAMHGTEDTRKHVSSLMPQVV 623
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 178 KYDTEDKIRHHQILEQISKWLDKGELKHTLTNTLSPINAAN 56
K D D+ H+++EQ + + K + TL S + AAN
Sbjct: 471 KMDESDRTAIHEVMEQQTISISKAGITTTLNARTSILAAAN 511
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 682 DEVLVG--TKPKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLI 539
D + +G T P L + AM T T EC+YD + KDKG L I
Sbjct: 338 DPIYLGKCTGPTSLCWAGGYAMESTCHTGQECLYDVV----KDKGWHLSI 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,765
Number of Sequences: 5004
Number of extensions: 63482
Number of successful extensions: 197
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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