Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l09
(801 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY122087-1|AAM52599.1| 1529|Drosophila melanogaster GH02912p pro... 52 9e-07
AE014134-551|AAF51149.1| 2409|Drosophila melanogaster CG3524-PA ... 52 9e-07
AF145643-1|AAD38618.1| 898|Drosophila melanogaster BcDNA.GH0762... 47 3e-05
AE014134-552|AAF51148.1| 2438|Drosophila melanogaster CG3523-PA ... 47 3e-05
AY070687-1|AAL48158.1| 413|Drosophila melanogaster RH24774p pro... 44 2e-04
AE014134-549|AAF51151.1| 362|Drosophila melanogaster CG17221-PB... 44 2e-04
AE014134-548|AAF51152.2| 413|Drosophila melanogaster CG17221-PA... 44 2e-04
AE014296-3573|AAF51744.3| 2352|Drosophila melanogaster CG7177-PA... 30 4.2
AE014134-886|AAZ66447.1| 7744|Drosophila melanogaster CG33715-PB... 29 9.8
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P... 29 9.8
>AY122087-1|AAM52599.1| 1529|Drosophila melanogaster GH02912p
protein.
Length = 1529
Score = 52.0 bits (119), Expect = 9e-07
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Frame = -3
Query: 658 PKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGL 479
P K T EQA+ +P T Y Y ++ +G +LI +GGVG A +A GL
Sbjct: 664 PSKWTMEQASTVPCVYATVY---YALVVRGQMKEGERILIHAGSGGVGQAAISVALAHGL 720
Query: 478 KVIGTASRPETQEFSLQHGTDI----VLNHTQDLIPQLV-AQGHGNGVDFIL 338
V T E +EF L+ + + N QL+ ++ HGNGV+ +L
Sbjct: 721 TVFTTVGSKEKREFLLKRFPKLKAKNIGNSRDTSFEQLIMSETHGNGVELVL 772
>AE014134-551|AAF51149.1| 2409|Drosophila melanogaster CG3524-PA
protein.
Length = 2409
Score = 52.0 bits (119), Expect = 9e-07
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Frame = -3
Query: 658 PKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGL 479
P K T EQA+ +P T Y Y ++ +G +LI +GGVG A +A GL
Sbjct: 1544 PSKWTMEQASTVPCVYATVY---YALVVRGQMKEGERILIHAGSGGVGQAAISVALAHGL 1600
Query: 478 KVIGTASRPETQEFSLQHGTDI----VLNHTQDLIPQLV-AQGHGNGVDFIL 338
V T E +EF L+ + + N QL+ ++ HGNGV+ +L
Sbjct: 1601 TVFTTVGSKEKREFLLKRFPKLKAKNIGNSRDTSFEQLIMSETHGNGVELVL 1652
>AF145643-1|AAD38618.1| 898|Drosophila melanogaster BcDNA.GH07626
protein.
Length = 898
Score = 47.2 bits (107), Expect = 3e-05
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Frame = -3
Query: 658 PKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGL 479
P+K T E+A+ +P T Y Y ++ KG +LI +GGVG A +A GL
Sbjct: 24 PEKWTMEEASTVPCVYSTVY---YALVVRGQMKKGEKILIHAGSGGVGQAAISVALAHGL 80
Query: 478 KVIGTASRPETQEFSLQHGTDI----VLNHTQDLIPQLV-AQGHGNGVDFIL 338
V T E +EF L+ + + N QLV + G GVD +L
Sbjct: 81 TVFTTVGSKEKREFLLKRFPKLQERNIGNSRDTSFEQLVLRETKGRGVDLVL 132
>AE014134-552|AAF51148.1| 2438|Drosophila melanogaster CG3523-PA
protein.
Length = 2438
Score = 47.2 bits (107), Expect = 3e-05
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Frame = -3
Query: 658 PKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGL 479
P+K T E+A+ +P T Y Y ++ KG +LI +GGVG A +A GL
Sbjct: 1564 PEKWTMEEASTVPCVYSTVY---YALVVRGQMKKGEKILIHAGSGGVGQAAISVALAHGL 1620
Query: 478 KVIGTASRPETQEFSLQHGTDI----VLNHTQDLIPQLV-AQGHGNGVDFIL 338
V T E +EF L+ + + N QLV + G GVD +L
Sbjct: 1621 TVFTTVGSKEKREFLLKRFPKLQERNIGNSRDTSFEQLVLRETKGRGVDLVL 1672
>AY070687-1|AAL48158.1| 413|Drosophila melanogaster RH24774p
protein.
Length = 413
Score = 44.4 bits (100), Expect = 2e-04
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Frame = -3
Query: 709 GSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIY---------DRLLISSKDK 557
GS+A+YVA+ + PK+L +AA++ +TA+ +Y S
Sbjct: 159 GSHAEYVAVPSYCLAPAPKELDDYEAASVLYAGLTAWSGLYITGGLGGPCGATTASGGGA 218
Query: 556 GRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGTDIVLNH 401
+ +L++ +GGVG++A Q+ K+ ++V+ T S E G D+V+++
Sbjct: 219 HKRVLVLGGSGGVGTLAIQILKSQKVQVLATCSE-NAIEMVRNLGADLVVDY 269
>AE014134-549|AAF51151.1| 362|Drosophila melanogaster CG17221-PB,
isoform B protein.
Length = 362
Score = 44.4 bits (100), Expect = 2e-04
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Frame = -3
Query: 709 GSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIY---------DRLLISSKDK 557
GS+A+YVA+ + PK+L +AA++ +TA+ +Y S
Sbjct: 108 GSHAEYVAVPSYCLAPAPKELDDYEAASVLYAGLTAWSGLYITGGLGGPCGATTASGGGA 167
Query: 556 GRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGTDIVLNH 401
+ +L++ +GGVG++A Q+ K+ ++V+ T S E G D+V+++
Sbjct: 168 HKRVLVLGGSGGVGTLAIQILKSQKVQVLATCSE-NAIEMVRNLGADLVVDY 218
>AE014134-548|AAF51152.2| 413|Drosophila melanogaster CG17221-PA,
isoform A protein.
Length = 413
Score = 44.4 bits (100), Expect = 2e-04
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Frame = -3
Query: 709 GSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIY---------DRLLISSKDK 557
GS+A+YVA+ + PK+L +AA++ +TA+ +Y S
Sbjct: 159 GSHAEYVAVPSYCLAPAPKELDDYEAASVLYAGLTAWSGLYITGGLGGPCGATTASGGGA 218
Query: 556 GRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGTDIVLNH 401
+ +L++ +GGVG++A Q+ K+ ++V+ T S E G D+V+++
Sbjct: 219 HKRVLVLGGSGGVGTLAIQILKSQKVQVLATCSE-NAIEMVRNLGADLVVDY 269
>AE014296-3573|AAF51744.3| 2352|Drosophila melanogaster CG7177-PA
protein.
Length = 2352
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -3
Query: 253 SGLVDLRPLKDKSVTLVSEMMFTRIKYDTEDKIRHHQILEQISKWLDKGELKHTLTNTLS 74
+GL +P KDKSV S+ + + K K ++E + K T TL+
Sbjct: 187 AGLTSGKPKKDKSVKGTSQAVVSDTKKMEARKSSSDTVIEPLIKQQAPLHSSKTTPTTLT 246
Query: 73 PINAANLREAHRLIEQQG 20
N+R + +EQ G
Sbjct: 247 ANFVQNIRFVRKNVEQSG 264
>AE014134-886|AAZ66447.1| 7744|Drosophila melanogaster CG33715-PB,
isoform B protein.
Length = 7744
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -3
Query: 256 SSGLVDLRPLKDKSVTLVSEMMFTRIKYDTEDKIRHHQILEQISKWLDK 110
S+ ++ L + +TL E+M R++ ++ +HH + E+ W++K
Sbjct: 5123 SNAIMQLTTKYNALLTLAKEVM-RRLEMHYQEHQQHHSLYEECQSWIEK 5170
>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
isoform D protein.
Length = 11707
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -3
Query: 256 SSGLVDLRPLKDKSVTLVSEMMFTRIKYDTEDKIRHHQILEQISKWLDK 110
S+ ++ L + +TL E+M R++ ++ +HH + E+ W++K
Sbjct: 5123 SNAIMQLTTKYNALLTLAKEVM-RRLEMHYQEHQQHHSLYEECQSWIEK 5170
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,028,507
Number of Sequences: 53049
Number of extensions: 655770
Number of successful extensions: 1533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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