Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l09
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical ... 58 7e-09
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical ... 40 0.003
Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical pr... 33 0.31
AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical ... 33 0.31
Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical pr... 30 0.45
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 28 6.8
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 28 6.8
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 28 8.9
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 28 8.9
>Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical
protein F39B2.3 protein.
Length = 328
Score = 66.5 bits (155), Expect = 2e-11
Identities = 46/179 (25%), Positives = 85/179 (47%)
Frame = -3
Query: 799 GAGVVVAKGQSXKTFNIGDEVFFTGDHRRNGSNAQYVALDEVLVGTKPKKLTFEQAAAMP 620
GAG V G+S K +GD V++ + S A+YVA++ P+ ++FE+ A++
Sbjct: 74 GAGFVELVGESVKNVKVGDRVWYGSEA---DSTAEYVAVNRPF--ELPEGVSFEEGASLG 128
Query: 619 LTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQE 440
+ +TAY ++ ++ G +L+ ++GGVGS Q+A ++ +GTA +
Sbjct: 129 VPYLTAYRALFH---LAGAKTGDVILVHGASGGVGSALMQLAAWRNIEAVGTAGSADGIR 185
Query: 439 FSLQHGTDIVLNHTQDLIPQLVAQGHGNGVDFILVNYDPFPYWDTLMKAIKPQGRICLI 263
F G V NH+ + + G + I +T + + P+GR+ +I
Sbjct: 186 FVKSLGARNVYNHSDKQYVSKMKNDYPGGFNHIF-EMAAHTNLNTDLGLLAPRGRVAVI 243
>AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical
protein F56H1.6 protein.
Length = 381
Score = 58.0 bits (134), Expect = 7e-09
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = -3
Query: 790 VVVAKGQSXKTFNIGDEVFFTGDHRRNGSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTS 611
VV + G GDEV G++A++V D KP L+F AAA+P +
Sbjct: 97 VVESVGGDVHNLAPGDEVMAVVPVILPGTHAEFVVTDSKYCSKKPSNLSFVSAAALPYVA 156
Query: 610 VTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGL-KVIGTASR 455
TAY + K + +LI AGGVGS+A Q+ K G K++ T ++
Sbjct: 157 STAYSAFTIARVSQRNAKQQRVLIHGGAGGVGSMAIQLLKAWGCEKIVATCAK 209
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 44.4 bits (100), Expect = 1e-04
Identities = 29/88 (32%), Positives = 41/88 (46%)
Frame = -3
Query: 700 AQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGG 521
A V +D P+ T +A+ +P+ TAY + R L+ DK +LI AGG
Sbjct: 1686 ATTVMVDRDYAWEVPRDWTLAEASTVPVVYTTAYYALVRRGLMKKGDK---ILIHGGAGG 1742
Query: 520 VGSVASQMAKNLGLKVIGTASRPETQEF 437
VG A +A G +V T E +EF
Sbjct: 1743 VGQAAIAIALAAGCEVFTTVGSAEKREF 1770
>AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical
protein D2063.1 protein.
Length = 326
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/83 (26%), Positives = 43/83 (51%)
Frame = -3
Query: 718 RRNGSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLI 539
++ G+ +Y + +V PK + AA + VTAY+ + + S G+ + +
Sbjct: 124 QKYGTFQEYATIRDVDAIKIPKSMNMAAAAPVLCGGVTAYKALKE----SEVKSGQIVAV 179
Query: 538 INSAGGVGSVASQMAKNLGLKVI 470
+ GG+GS A Q A+ +G++V+
Sbjct: 180 TGAGGGLGSFAIQYARAMGMRVV 202
>Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical
protein K04D7.4 protein.
Length = 1159
Score = 32.7 bits (71), Expect = 0.31
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -3
Query: 742 EVFFTGDHRRNGSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIYDRLLISSK 563
EV T NG +Y+ L + + T P+K+TF++ + PLT + A D L
Sbjct: 255 EVTITPPDEMNGELDKYLVLIQAVNETIPRKMTFDKPTSTPLT-ICALSPSTDYALAIEA 313
Query: 562 DKG 554
D G
Sbjct: 314 DNG 316
>Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical
protein VF11C1L.1 protein.
Length = 1482
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 559 KGRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGTDIVLNHTQDLIPQ 380
K +L+++ GGV +A+Q+ G+KV Q S G DIV N L+ Q
Sbjct: 510 KRASLILVE--GGVSHIAAQLLHKRGIKVAVNVKMSILQRISRATGADIVSNSDSQLVEQ 567
>AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical
protein VF11C1L.1 protein.
Length = 1482
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 559 KGRTLLIINSAGGVGSVASQMAKNLGLKVIGTASRPETQEFSLQHGTDIVLNHTQDLIPQ 380
K +L+++ GGV +A+Q+ G+KV Q S G DIV N L+ Q
Sbjct: 510 KRASLILVE--GGVSHIAAQLLHKRGIKVAVNVKMSILQRISRATGADIVSNSDSQLVEQ 567
>Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.6 protein.
Length = 347
Score = 30.3 bits (65), Expect(2) = 0.45
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Frame = -3
Query: 757 FNIGDEVFFTGDHRRNGSNAQYVALDEVLVGTKPKKLTFEQAAAMPLTSVTAYECIYDRL 578
+N+ ++ F NG+ +++V D P L+FE A + SV C +
Sbjct: 107 YNLCPDMRFFATPPVNGALSRFVVHDADFCFKLPDNLSFEDGALLEPLSVAIQACRRGTV 166
Query: 577 LISSKDKGRTLLIINSAGGVGSVASQMAKNLGL-KVIGTASRPETQEFSLQHGTDIVLN 404
+ K +++ AG +G + AK +G KV+ T E + G D +N
Sbjct: 167 QMGQK------ILVLGAGPIGVLNLLTAKAIGASKVVITDLNDERLALARLLGADATIN 219
Score = 20.6 bits (41), Expect(2) = 0.45
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 796 AGVVVAKGQSXKTFNIGDEV 737
+GVV G K F +GD +
Sbjct: 69 SGVVSEIGSEVKGFKVGDRI 88
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -3
Query: 652 KLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGLKV 473
K+TF++AA +P+ +A+E SS +L +NS+ + S +S ++ +
Sbjct: 337 KMTFKKAANIPILKTSAFEQPSSPPPSSSVSSSISLSEVNSSTSIASESSPAKRSSNFDL 396
Query: 472 IGTASRPETQEFSL 431
+ P Q L
Sbjct: 397 TASNELPPPQMVEL 410
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -3
Query: 652 KLTFEQAAAMPLTSVTAYECIYDRLLISSKDKGRTLLIINSAGGVGSVASQMAKNLGLKV 473
K+TF++AA +P+ +A+E SS +L +NS+ + S +S ++ +
Sbjct: 351 KMTFKKAANIPILKTSAFEQPSSPPPSSSVSSSISLSEVNSSTSIASESSPAKRSSNFDL 410
Query: 472 IGTASRPETQEFSL 431
+ P Q L
Sbjct: 411 TASNELPPPQMVEL 424
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 366 PWATSCGIKSCV*LRTMSVPC*R-LNSCVSGREAVPITFNPKFFA 497
P T+ + +CV T PC + +CV+G+EA+ I N FF+
Sbjct: 517 PAETTTEVPACVEGATAIEPCSQHYKNCVNGQEAIFICENGLFFS 561
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 366 PWATSCGIKSCV*LRTMSVPC*R-LNSCVSGREAVPITFNPKFFA 497
P T+ + +CV T PC + +CV+G+EA+ I N FF+
Sbjct: 517 PAETTTEVPACVEGATAIEPCSQHYKNCVNGQEAIFICENGLFFS 561
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,062,807
Number of Sequences: 27780
Number of extensions: 339283
Number of successful extensions: 908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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