Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l09
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   7.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 175 YDTEDKIRHHQILEQISKWL 116
           Y +   + HHQ+L Q S +L
Sbjct: 70  YQSHHHLHHHQVLYQQSPYL 89


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 271 CLIVDSSGLVDLRPLKDKSVTLVSEM 194
           CL+     ++ + P  DK  TLV E+
Sbjct: 26  CLVGKGMKVIGIAPQVDKMKTLVEEL 51


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 346 FILVNYDPFPYWDTLMK 296
           FIL+NY  F Y+++L++
Sbjct: 16  FILINYFIFLYFNSLVR 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,968
Number of Sequences: 438
Number of extensions: 4088
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)