Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l03
(211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ... 30 0.036
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 0.26
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 0.34
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 1.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 1.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 23 4.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 5.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 23 5.5
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 23 7.3
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 23 7.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 23 7.3
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 22 9.6
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 22 9.6
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 22 9.6
>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 80
Score = 30.3 bits (65), Expect = 0.036
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 68 RLVNTLLQEELKTIHAFTQ 12
RLVN LQE +K IHAFTQ
Sbjct: 52 RLVNHKLQEVIKDIHAFTQ 70
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 0.26
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAIA-SVILNNKDPL 172
+PI T++N+S I S + S AIA S ILN+ P+
Sbjct: 3430 TPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPI 3468
Score = 25.0 bits (52), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN S I S + S I +S ILN+ P+
Sbjct: 1210 TPITSSTVLNTSTPITSSSVLNSSTPITSSSILNSSTPI 1248
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI ++LN+S I S + S I +S ILN+ P+
Sbjct: 3106 TPITSSSVLNSSTAITSSSILNSSTPITSSSILNSSTPI 3144
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN S I S + S I +S +LN+ P+
Sbjct: 1522 TPITSSTVLNTSTPITSSSVLNSSTPITSSSVLNSSTPI 1560
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI ++LN+S I S + S I +S +LN+ P+
Sbjct: 3166 TPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTPI 3204
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI ++LN+S I S + S I +S +LN+ P+
Sbjct: 3442 TPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPI 3480
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S ++N P+
Sbjct: 802 TPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPI 840
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S ++N P+
Sbjct: 1090 TPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPI 1128
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S ++N P+
Sbjct: 1390 TPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPI 1428
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S ++N P+
Sbjct: 2230 TPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPI 2268
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S ++N P+
Sbjct: 2518 TPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPI 2556
Score = 23.8 bits (49), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S LN P+
Sbjct: 598 TPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPI 636
Score = 23.8 bits (49), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI ++LN S I S + S AI +S LN P+
Sbjct: 994 TPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPI 1032
Score = 23.8 bits (49), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S LN P+
Sbjct: 2818 TPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPI 2856
Score = 23.8 bits (49), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI T+LN+S I S + S I +S LN P+
Sbjct: 3046 TPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPI 3084
Score = 22.6 bits (46), Expect = 7.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 59 SPICERTILNASALIIWSLLCKSGLAI-ASVILNNKDPL 172
+PI ++LN+S I S + S I +S LN P+
Sbjct: 1618 TPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPI 1656
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.1 bits (57), Expect = 0.34
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 198 KTDLKR*KYNGSLLFKITDAIARPDLHNKDHIMRAEAFKIVL 73
K +K K G + K DA+ +LHN+ +M+ IVL
Sbjct: 897 KNQVKSVKIKGMTIIKAPDALKNANLHNEVIVMQTTDKPIVL 938
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 68 RLVNTLLQEELKTIHAFTQKT 6
RLVN++L+EE++ +H T
Sbjct: 81 RLVNSILKEEIRNMHGLNLST 101
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 1.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 65 ICERTILNASALIIWSLLCKSGLAI 139
+C+ S LIIW L+C+ ++
Sbjct: 1567 LCDTKTYEESKLIIWKLICQKACSL 1591
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 86 LKSSFRRLVNTLLQEELKTIH 24
+KS F+RL++ L E ++ IH
Sbjct: 454 MKSLFQRLLSISLNENVRAIH 474
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 87 FKIVLSQIGEHIASRGTEDNPRVHP 13
FK +SQ E + + ED+ + HP
Sbjct: 43 FKTTISQNNEEVKTSLKEDSSKFHP 67
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 72 SQIGEHIASRGTEDNPRVHPEN 7
S+I I G E+NP V+P N
Sbjct: 853 SKIARLIFRVGNEENPLVYPNN 874
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 22.6 bits (46), Expect = 7.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 143 MQSQDQIYTIKTIL*GLKHLKSSFRRLVNTLLQEELK 33
+ + Q +T IL GLK K++ RR N +EEL+
Sbjct: 25 LNKKSQFHTT-CILQGLKKQKANQRRKQNLKRREELR 60
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = -2
Query: 84 KIVLSQIGEHIASRGTEDNPRVHPEN 7
K++++++ +HIA+R D+ +P+N
Sbjct: 173 KLIINRL-DHIATRNITDSMEFNPKN 197
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 22.6 bits (46), Expect = 7.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 120 HNKDHIMRAEAFKIVLSQIGEHIASRGTEDNPRV 19
H ++ E F I S + ASR T D+PRV
Sbjct: 574 HETSRRIKTE-FLIQWSSLARAAASRQTADHPRV 606
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 128 GLAIASVILNNKDPLYFYRF 187
G AIAS I +NK P Y +
Sbjct: 515 GAAIASPIFSNKVPKYLREY 534
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 62 VNTLLQEELKTIHAFTQK 9
+NT++ ELK +H +K
Sbjct: 187 INTVVDPELKRVHELVEK 204
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 131 LAIASVILNNKDPLYFY 181
L I + KDPL+FY
Sbjct: 372 LQIVDCLCTQKDPLFFY 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 867,656
Number of Sequences: 5004
Number of extensions: 14127
Number of successful extensions: 55
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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