Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l03
         (211 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF060511-1|AAG43129.1|   86|Homo sapiens My016 protein protein.        33   0.17 
BC008798-1|AAH08798.1|  258|Homo sapiens complement component 1,...    28   4.8  
AF410771-1|AAK95248.1|  258|Homo sapiens C1q-related factor prot...    28   4.8  
AF095154-1|AAC64186.1|  258|Homo sapiens C1q-related factor prot...    28   4.8  
AF525315-1|AAP80787.1|  287|Homo sapiens C1q-domain containing p...    28   6.3  

>AF060511-1|AAG43129.1|   86|Homo sapiens My016 protein protein.
          Length = 86

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/22 (72%), Positives = 16/22 (72%)
 Frame = -3

Query: 68  RLVNTLLQEELKTIHAFTQKTL 3
           RLVN  L EEL  IHAF QKTL
Sbjct: 54  RLVNACLAEELPHIHAFEQKTL 75


>BC008798-1|AAH08798.1|  258|Homo sapiens complement component 1, q
           subcomponent-like 1 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 104 IWSLLCKSGLAIASVILNNKDPLYFYRFRSVL 199
           +W+ LCK+G   AS I  + D  Y Y   SV+
Sbjct: 190 MWADLCKNGQVRASAIAQDADQNYDYASNSVI 221


>AF410771-1|AAK95248.1|  258|Homo sapiens C1q-related factor
           protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 104 IWSLLCKSGLAIASVILNNKDPLYFYRFRSVL 199
           +W+ LCK+G   AS I  + D  Y Y   SV+
Sbjct: 190 MWADLCKNGQVRASAIAQDADQNYDYASNSVI 221


>AF095154-1|AAC64186.1|  258|Homo sapiens C1q-related factor
           protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 104 IWSLLCKSGLAIASVILNNKDPLYFYRFRSVL 199
           +W+ LCK+G   AS I  + D  Y Y   SV+
Sbjct: 190 MWADLCKNGQVRASAIAQDADQNYDYASNSVI 221


>AF525315-1|AAP80787.1|  287|Homo sapiens C1q-domain containing
           protein protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 104 IWSLLCKSGLAIASVILNNKDPLYFYRFRSVL 199
           +W+ LCK+G   AS I  + D  Y Y   SV+
Sbjct: 219 MWADLCKNGQVRASAIAQDADQNYDYASNSVV 250


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,982,448
Number of Sequences: 237096
Number of extensions: 477429
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 76,859,062
effective HSP length: 48
effective length of database: 65,478,454
effective search space used: 1375047534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)