Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l03
(211 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine re... 27 1.8
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 26 4.2
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 26 4.2
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical p... 25 5.6
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 25 5.6
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 25 5.6
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 25 5.6
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 25 5.6
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 25 7.3
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 25 7.3
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ... 25 9.7
>AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine
receptor, class h protein40 protein.
Length = 352
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 53 MCSPICERTI-LNASALIIWSLLCKSGLAIASVILNNKDPLYFY 181
+C+ C+ T + ++ WS++C L I+ +N+K+ L ++
Sbjct: 64 LCTMFCDFTWGILVIPMMFWSVVCGYTLGISKYFINSKNILMYF 107
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 52 NVFTNLRKDDFK 87
NVF NLRKD+FK
Sbjct: 337 NVFKNLRKDEFK 348
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 18 ERVDCLQFLLKQCVHQSAKGR 80
+++ Q+LL+QCV S +GR
Sbjct: 353 QQIHSAQYLLQQCVRNSTQGR 373
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 18 ERVDCLQFLLKQCVHQSAKGR 80
+++ Q+LL+QCV S +GR
Sbjct: 370 QQIHSAQYLLQQCVRNSTQGR 390
>Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical
protein C50B6.12 protein.
Length = 329
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 168 GSLLFKITDAIARPDLHN 115
G ++F +T+ I+RP +HN
Sbjct: 48 GCIIFDLTEFISRPHIHN 65
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 189 LKR*KYNGSLLFKITDAIARPDLHNKDHIMRAEAFKIVLSQI 64
LK+ K +GSL +I D AR ++HI + + + QI
Sbjct: 519 LKQMKLDGSLEKEIEDETARMSATGEEHIQKRSQLEAGIRQI 560
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 189 LKR*KYNGSLLFKITDAIARPDLHNKDHIMRAEAFKIVLSQI 64
LK+ K +GSL +I D AR ++HI + + + QI
Sbjct: 519 LKQMKLDGSLEKEIEDETARMSATGEEHIQKRSQLEAGIRQI 560
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 168 GSLLFKITDAIARP 127
GSL F ITDA ARP
Sbjct: 3096 GSLTFSITDAYARP 3109
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 71 ERTIL-NASALIIWSLLCKSGLAIASVILNNKDPL 172
ERT++ +A IIW L + LAI + I N + L
Sbjct: 124 ERTLMAEDTAAIIWETLQRFNLAIVASIQGNNESL 158
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 77 TILNASALIIWSLLCKSGLAIASVILNNKD 166
T L S + WS+LC + I SV + KD
Sbjct: 1620 TALKLSEVRGWSVLCNDPVRIMSVYIPEKD 1649
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 77 TILNASALIIWSLLCKSGLAIASVILNNKD 166
T L S + WS+LC + I SV + KD
Sbjct: 1741 TALKLSEVRGWSVLCNDPVRIMSVYIPEKD 1770
>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
protein C26G2.1 protein.
Length = 1270
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 101 IIWSLLCKSGLAIASVILNNKDPLYFYRF 187
++ SLLC + I + +K+ YF+RF
Sbjct: 491 LVMSLLCLCEVVIMNFFRFSKNVFYFFRF 519
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,750,344
Number of Sequences: 27780
Number of extensions: 76699
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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