Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l03
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   1.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   2.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   6.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   8.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   8.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   8.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 207 FKNKTDLKR*KYNGSLLFKITDAI 136
           F+N +DLK    +G+ L  + DA+
Sbjct: 427 FRNCSDLKELDLSGNELTSVPDAL 450


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 127 WSCDCIGYFK 156
           W   CIGY+K
Sbjct: 66  WIFSCIGYYK 75


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 29  LSSVPLEAMCSP 64
           ++  PLE MC P
Sbjct: 106 ITKAPLECMCRP 117


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 1   LRVFWVNAW 27
           L VFW +AW
Sbjct: 165 LSVFWGSAW 173


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 3   KGFLGERVDCLQFL 44
           +GF G RVD L ++
Sbjct: 215 RGFDGFRVDALPYI 228


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 26  GLSSVPLEAMCSPICERTILNASALII 106
           GLS  P +     +     L+ASA+++
Sbjct: 171 GLSKAPAQIPVDVLVLTVTLSASAMVL 197


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 3   KGFLGERVDCLQFL 44
           +GF G RVD L ++
Sbjct: 215 RGFDGFRVDALPYI 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,889
Number of Sequences: 438
Number of extensions: 862
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)