Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l02
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 33 0.047
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.33
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 1.3
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.3
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 27 2.3
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 2.3
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 27 4.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.4
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 26 7.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 9.4
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 25 9.4
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 33.1 bits (72), Expect = 0.047
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = -1
Query: 717 RKGSGPKSETSEERAA--RLAKMSAYAAQRLANESPEQRATRLKRMSEYA----AKRLSS 556
R+ P ERAA R K A A+RL + E++ RLK+ E A KRL
Sbjct: 695 RRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEK--RLKKKEEKARKAEEKRLQK 752
Query: 555 ETREQRAIRLARMSAYAARRLANETP 478
E R + A +++R SA+A + +AN P
Sbjct: 753 E-RAKYAKQMSRESAHADQAIANTGP 777
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.3 bits (65), Expect = 0.33
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Frame = -1
Query: 795 LNTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESP 616
L +E + ++ L + K ++R K K EER R A+ A A + A E+
Sbjct: 573 LEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAK 632
Query: 615 EQRATR-------LKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARL 457
Q R LKR E + L + RE++ + R ++ E ++ AR
Sbjct: 633 RQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREK--KLKKQQQEADREKMARE 690
Query: 456 LRMSAYAAKR 427
R+ KR
Sbjct: 691 QRLREEEEKR 700
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 515 DILANLIALCSLVSD-ESLLAAYSDIRFSLVARCSGDSFASLCAAYAD--ILASRAALSS 685
D+L LI+LC +SD S+L S + V S S+ A+ + AS A +
Sbjct: 541 DVLNELISLCDSLSDYRSILLLISLFFLTSVQTASSSQQISMFKAFRKTYLFASNAGIHI 600
Query: 686 DVSLFGPEPFLRLRALGSNND 748
+ + P L+ +GS+ +
Sbjct: 601 NAPYWDPFMITDLKFIGSSEN 621
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.3
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = -1
Query: 654 SAYAAQRLANESPE--QRATRLKRMSEYAAKRLSSETREQRAIRLARMSAY-----AARR 496
+A Q LAN+ E Q+ +LK E + LS ++ + R A AAR+
Sbjct: 417 AAMQGQILANDRREIRQKEAKLKSEQEMEKQDLSLSWQDTMSNPQDRKFAQDVRDSAARQ 476
Query: 495 LANETPAQRQARLLRMSAYAAKRQASKK 412
L +ETP+ RQA +Y + S K
Sbjct: 477 LTSETPSWRQATRNANISYGKRTTLSMK 504
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 624 ESPEQRATRLKRM-SEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQ 466
E Q+A +L++ ++ AAK+ E R+ + + A++++ A + TP +++
Sbjct: 31 ERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKKAKIASPVAEYVEKTTPGEKK 84
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 723 RRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMS 583
++ KG+G ET EE+ AR K A++ ++ P+ R + S
Sbjct: 471 KQGKGNGRAKETPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKLKQS 517
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +2
Query: 521 LANLIALCSLVSDESLLAAYSDIRFSLVARCSGDSFASLCAAYADILASRAALSSDVSLF 700
+A + L +L +LL +YS SL C+GDS A L D LS D +
Sbjct: 195 VAASLLLPALSGSCALLTSYSAKSKSLQVACTGDSRAVLGECTPDGSWEAIPLSRDQTGM 254
Query: 701 GPEPFLRL 724
P+ RL
Sbjct: 255 NPDEASRL 262
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 5.4
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 1/130 (0%)
Frame = -1
Query: 708 SGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIR 529
S P + + R+ K A Q + E E L + K+L+ E R I
Sbjct: 148 SNPMPAQTTPVSMRMTKRQR-AIQGILEEGEEDELLELPPETS-GRKKLTPEEMALRRIE 205
Query: 528 LARMSAYAARRLANETPAQRQARLLRMSAYAAKRQASKKSLSTVNDSLNYS-IMPNQSRA 352
AR + R E + RLL+ + K + + + +DS++ S +P
Sbjct: 206 NARRRKNQSERRLEEEKMETINRLLKRQSNTGKPRRGRAPNNPTSDSISRSKAVPKDRIN 265
Query: 351 TNHPFT*ILF 322
PF + F
Sbjct: 266 MYQPFQCVRF 275
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 152 NLVFSNHQYYSCHYF*EWFPYT 217
N+V +NHQ YS + W YT
Sbjct: 96 NIVIANHQLYSDWMYVWWLSYT 117
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 645 AAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQ 472
AAQR + E A L+ E + RE+ AIR+ A++LA E A+
Sbjct: 586 AAQRALKQKQESEAESLRVQEEINKRNAERIRREKEAIRINE-----AKKLAEELKAK 638
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 792 NTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSE--ERAARLAKMS 652
N EP+D+ D +L + RR+ + S P S +++ R L K S
Sbjct: 40 NDPEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSNQVSSRTRALTKRS 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,875
Number of Sequences: 5004
Number of extensions: 49874
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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