Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l02
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 37 0.021
03_06_0316 + 33091194-33091370,33091451-33092155 36 0.028
07_03_0798 - 21581718-21581724,21582642-21582934 33 0.35
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 31 1.1
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290... 31 1.4
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 29 3.2
11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971... 29 3.2
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 29 3.2
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 29 4.3
09_03_0067 - 12035991-12036389,12036928-12037071,12037917-120379... 29 4.3
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 4.3
07_03_1790 - 29536497-29536625,29536734-29536848,29537357-295375... 29 4.3
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 29 4.3
10_02_0071 + 4928899-4929465 29 5.6
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 29 5.6
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 28 7.4
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 28 7.4
06_03_0234 + 18555036-18555264,18559110-18559234,18559506-18559925 28 7.4
01_01_0051 + 389051-389623 28 7.4
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 28 9.8
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671 28 9.8
01_06_1050 + 34125087-34126001,34126082-34126639 28 9.8
01_06_1042 + 34068086-34069294,34069331-34069615 28 9.8
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 36.7 bits (81), Expect = 0.021
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Frame = -1
Query: 738 EPKARRRRKGSGPKSETSEERAA-----RLAKMSAYAAQRLANESPEQRAT--RLKRMSE 580
E + R R + + ERAA R + +A A +R A E+ E+ AT R + +E
Sbjct: 589 EARQRAERAAVQRAQKEARERAAVDARERAERAAAEAKERAAAEAKEKVATQARDRAAAE 648
Query: 579 YAAKRLSSETREQRAIRLA--RMSAYAARRLANETPAQRQARLLRMSAYAAKRQASK 415
AA + + +RA R A R ++ A R A E +RQA +A AAK + SK
Sbjct: 649 RAAVERAQQEARRRAERAAVERAASEARERQAAEA-RERQAAAAAAAAAAAKEKQSK 704
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 36.3 bits (80), Expect = 0.028
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Frame = -1
Query: 753 PLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYA 574
P + +PKA + K P + + AK +A +SP + A + K +
Sbjct: 146 PKAAAKPKAAAKPKAKAPAKSKAAAKPKAAAKPAAKPKAAAKPKSPAKPAAKPKAAPKAK 205
Query: 573 AK-------------RLSSETREQRAIRLARMSAYAARRLANETPAQRQARLLRMSAYAA 433
AK + ++ T+ + AR A AA+ A +TP+++ A + A AA
Sbjct: 206 AKPAAKPKAKAAPKPKAAAVTKTKATSAPARRPAKAAKTSAKDTPSKKAAPAAKKPAAAA 265
Query: 432 KRQASKKS 409
K+ +KK+
Sbjct: 266 KKAPAKKA 273
>07_03_0798 - 21581718-21581724,21582642-21582934
Length = 99
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -1
Query: 780 PVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRAT 601
PVD E +P ++ P +RRR+ SGP + + +++ +A A+ A P R T
Sbjct: 17 PVDQAAEEEPAAVAPPAEKRRRRPSGPAWKPT---LGAISEDAAVASSAAAKAKPAAR-T 72
Query: 600 RLKRMSEYAA 571
+ K + AA
Sbjct: 73 KAKAKGKAAA 82
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 738 EPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLA 628
E K +R+R+G G + SE AA+L MS Q LA
Sbjct: 67 EDKRKRKRRGDGEDVDNSESDAAKLEGMSYRELQALA 103
>08_01_0322 -
2898272-2898475,2898548-2898730,2898817-2899702,
2902070-2902374
Length = 525
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 392 SFTVLRDFLLACLFAA-YADILNSLACLCAGVSLASRRAAYADILANLIALCSLVSDESL 568
SF R+ + C+ ++ + I SL CL S + AAY + + NL+ V +SL
Sbjct: 150 SFMTAREAVQTCVLSSRWRHIWKSLQCLNIKGSEFTSEAAYVNFMDNLVLRRGCVPLDSL 209
Query: 569 LAAYSDIRFSL 601
L S R SL
Sbjct: 210 LLCNSYGRVSL 220
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = -1
Query: 729 ARRRRKGSGPKSETSEERAARLA---KMSAYAAQRLANESPEQRATRLKRMSEYAAKRLS 559
AR R+G T ++R+ A K + R+ E P +L E +
Sbjct: 531 ARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTII 590
Query: 558 SETREQRAIRLARMSAYAARRL 493
E RE+R +R A M A A +
Sbjct: 591 QEEREERILRKAEMEATKAENM 612
>11_06_0724 -
26696401-26696703,26696875-26697025,26697115-26697184,
26697526-26697736,26697928-26698085,26698684-26699500
Length = 569
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 602 VARCSGDSFASLC-----AAYADILASRAALSSDVSLFGPEPFLR 721
VA C GD+ AS C AAYA A LS D ++F E LR
Sbjct: 80 VALCRGDANASACSGCVDAAYAAATARLCPLSKDAAVFYDECALR 124
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -1
Query: 753 PLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYA 574
P+S ++ KG GP S + MSA + LA E+R + + EY
Sbjct: 306 PISTTCYANKQNVKGKGPMSAVIRASSLTFPNMSAIISTHLAGLPEEKRICLMDALGEYD 365
Query: 573 AKRLSSETREQR 538
+ S T +R
Sbjct: 366 KQAKESATEIER 377
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 530 LIALCSLVSDESLLAAYSDIRF-SLVARCSGDSFASLCAAYADILASRAALSSDVSLFGP 706
L+A LVS AA + VA GDS + + +AD LA+R +L S + P
Sbjct: 405 LLACADLVSKGDHPAALRHLHLLRRVASPLGDSMQRVASHFADALAARLSLLSSPTSASP 464
Query: 707 EP 712
P
Sbjct: 465 SP 466
>09_03_0067 -
12035991-12036389,12036928-12037071,12037917-12037946,
12039881-12040159
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 650 HMQHRGWQMSHRNSAPLD*SVCPNM 576
H+QHR WQM H +AP+ CP++
Sbjct: 247 HLQHR-WQMQHAQTAPMI-PTCPSI 269
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -1
Query: 720 RRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQ 541
RR+G SE EER ARL +M A A EQR +RLK+ ++ AK +S Q
Sbjct: 423 RRRGVQHMSE--EEREARLRQMQADAEVH-----EEQRWSRLKKAADDDAKEAASVNANQ 475
>07_03_1790 -
29536497-29536625,29536734-29536848,29537357-29537508,
29537589-29537737,29538936-29539098,29539575-29539686,
29539791-29540152
Length = 393
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 486 ETPAQRQARLLRMSAYAAKRQASKKSLSTVNDSLNYSIMPNQSRATNH 343
E + Q+RL+ + AY + KSL + N +++++P SRATN+
Sbjct: 101 EATQEDQSRLVPVKAYFPCTSINLKSLQSQN---SFNVIPPTSRATNY 145
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = -1
Query: 744 LLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKR 565
LL P A R GSG S + AAR ++++A + P M +
Sbjct: 15 LLRPSAARAGSGSGNLSSSPPPPAARPSRLAALIGRAAGRRGPSMLVRETAAMQLERRRA 74
Query: 564 LSSETREQRAIRLARMSAYAARRLA 490
+ +R A+ +A A+AA A
Sbjct: 75 DWAHSRPVVALDIAWNVAFAAAAAA 99
>10_02_0071 + 4928899-4929465
Length = 188
Score = 28.7 bits (61), Expect = 5.6
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -1
Query: 774 DMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKM--SAYAAQRLANESPEQRAT 601
D++ + LS + KA +R G G S +S RAA + S + NE+ E
Sbjct: 36 DVVLRLIMLSAVS-KASVKRTGGGKASSSSSPRAAPPPPVMTSCRRDDSIRNEAVEDCIE 94
Query: 600 RLKRMS-EYAAKRLSSETREQRAIRLARMSAYAARR 496
LKR S E A +LSS T + + +AR A A +
Sbjct: 95 FLKRSSAEGDAAKLSSVTAAE-TVAVARDLAMATTK 129
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/114 (22%), Positives = 46/114 (40%)
Frame = -1
Query: 732 KARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSE 553
+ + R K + E +EER + + +R + +RATR +A R +E
Sbjct: 1124 ETKERDKKFEKEREIAEERERKKLEEQEREREREKDRLAVERATREAHERAFAEARERAE 1183
Query: 552 TREQRAIRLARMSAYAARRLANETPAQRQARLLRMSAYAAKRQASKKSLSTVND 391
+ AR A A R E A +A R + A+R A +++ + +
Sbjct: 1184 KIALERVTAARQRASAEAR-EKEERASTEAAAERAARIKAERAAVERATAEARE 1236
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 491 ASRRAAYADILANLIALCSLVSDESLLAAYSDIRFSLVARCSGDSFAS 634
++ R A IL CSL+ D S+L YSD + +A S D S
Sbjct: 343 STSRRKLASILHESGKKCSLIDDASVLERYSDASCNSIAVFSDDDALS 390
>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 764 KKWIHYHCWSLKRVDEGKAQDQRVKHQKREPHG*PRCLHMQH 639
++W+ C S D +QR++ ++R P +CLH+ H
Sbjct: 1281 RRWVCNECKSFYICDRCYNAEQRLEEKERHPSN-SKCLHILH 1321
>06_03_0234 + 18555036-18555264,18559110-18559234,18559506-18559925
Length = 257
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -1
Query: 714 KGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRA 535
KG GP E A MSA L EQR++ + ++EY + S +R
Sbjct: 134 KGKGPMVEAIRAPAYTFPNMSAIIWPHLGGLPNEQRSSLQESIAEYDRQAKESAVEIERH 193
Query: 534 IRL 526
R+
Sbjct: 194 FRI 196
>01_01_0051 + 389051-389623
Length = 190
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 503 AAYADILANLI-ALCSLVSDESLLAAYSDIRFSLVARCSGDSFASLCAAYADILASRAAL 679
A + D LA + ALC++ +D + A D + C+ + A + YADI A L
Sbjct: 2 ATFRDHLAVIAEALCAIAADMNAAARALDPSTVISLACAAFTVAIVLVCYADICGRLATL 61
Query: 680 SS 685
S
Sbjct: 62 HS 63
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/106 (22%), Positives = 45/106 (42%)
Frame = -1
Query: 789 TVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQ 610
T +P + EM + P+A ++ G G E A+L K A+ + +
Sbjct: 45 TAKPARAVFEMPHRT--SPRAPKKPAGGGAAVSRVAELEAKLGKAEGQLAEMREQLAAAE 102
Query: 609 RATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQ 472
+A + R + +K+ S ++ R+A A ++ A +TP Q
Sbjct: 103 KARKDARAALVESKKRFSAAKK----RVATAGAASSSAAAEQTPPQ 144
>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
Length = 340
Score = 27.9 bits (59), Expect = 9.8
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = -1
Query: 738 EPKARRRRKGSGPKSETSEERA--ARLAKMSAYAAQRLANESPEQ-RATRLKRMSEYAAK 568
+P +RR+ P + EE+A A +A +A AA N + A L++ +
Sbjct: 177 QPSEPKRRRKQQPPQQQKEEKAGEATMATAAAAAASTQGNHTSHHFPAAPLQQQPVHVMS 236
Query: 567 RLSSETREQRAIRLARMSAYAARRLANETPAQRQARLLRMSAYAAKRQAS 418
+ A A A AAR PA Q S Y ++ Q S
Sbjct: 237 YNVARPSSSAAYYAAARPASAARPPPPLPPAPPQEHSYAYSPYYSQSQPS 286
>01_06_1050 + 34125087-34126001,34126082-34126639
Length = 490
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 651 AYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAAR 499
A+ A+RL + PE+R A R+ E RE+ A LAR + +R
Sbjct: 241 AWRAKRLLDLEPERRMREALATIHGYADRIVRERRERGAAGLARKDDFLSR 291
>01_06_1042 + 34068086-34069294,34069331-34069615
Length = 497
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = -1
Query: 654 SAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPA 475
S + +RL N PE+R A+R+ E RE+ LAR + +R A+ +
Sbjct: 236 SLWRFKRLFNMEPERRMREALATIHGFAERIVRERRERGKAGLARSDDFLSRFAASGEHS 295
Query: 474 QRQARLLRMSAYAAKRQASKKSLS 403
R + + A R + +L+
Sbjct: 296 DESLRDVVTNFLLAGRDTTSSALT 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,381,408
Number of Sequences: 37544
Number of extensions: 313933
Number of successful extensions: 1038
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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