Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11l02
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-14|AAB53834.1| 270|Caenorhabditis elegans Hypothetical p... 43 3e-04
Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like p... 34 0.10
AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolo... 34 0.10
Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical pr... 32 0.41
AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical ... 32 0.54
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 29 3.8
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical pr... 29 5.1
U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 29 5.1
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 29 5.1
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 29 5.1
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 28 6.7
U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical pr... 28 6.7
AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical... 28 6.7
AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical... 28 6.7
U97552-8|AAB52863.2| 131|Caenorhabditis elegans Hypothetical pr... 28 8.9
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 28 8.9
>U00048-14|AAB53834.1| 270|Caenorhabditis elegans Hypothetical
protein C05D11.13 protein.
Length = 270
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/94 (30%), Positives = 45/94 (47%)
Frame = -1
Query: 741 LEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRL 562
L +A R+R ETSEE RLAK + Y +R + E+ E+ RLKR +E
Sbjct: 71 LSKEAHRKRLRRA--RETSEETHTRLAKAADYKRKRCSEETEEEYRERLKRQAERKKMER 128
Query: 561 SSETREQRAIRLARMSAYAARRLANETPAQRQAR 460
E+ +Q R + + + + L E+ + Q R
Sbjct: 129 MQESEDQANNRRIKAAEHRRQYLQRESFEKAQER 162
Score = 39.1 bits (87), Expect = 0.004
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = -1
Query: 729 ARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSET 550
A RRRK +ET EE R AK + + NE+PE+ R +R + + L +ET
Sbjct: 167 AERRRKSL--LAETPEEAELRRAKNAQRRRDAIKNETPEEAENRRQRDAARRRQYLQTET 224
Query: 549 REQRAIRLARMSAYAARRLAN 487
EQ++ AR AAR+ N
Sbjct: 225 SEQKS---ARKIQDAARKRQN 242
>Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical
protein W04D2.6b protein.
Length = 547
Score = 40.3 bits (90), Expect = 0.002
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Frame = -1
Query: 735 PKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSS 556
P+A +R + S S +S E + ++ S+Y++ R + +P++ T +R S A S
Sbjct: 89 PEASKRSRRSRSSSNSSSESDSSSSRSSSYSS-RSRSRTPQRSRTSKRRRSNSHASEDSD 147
Query: 555 ETREQRAIR---LARMSAYAARRLANETPAQRQARLLRMSAYAAKRQASKKSL 406
+ RE+RA + L + AY AR E+ ++ ++ R K + KK+L
Sbjct: 148 DAREKRAFKQMMLDKKQAYLARLKRWESRERQMSK--RYEREERKEKDRKKTL 198
>AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like
protein ICP-1 protein.
Length = 622
Score = 34.3 bits (75), Expect = 0.10
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Frame = -1
Query: 786 VEPVDMIQEMDPLSLLEPKARR-RRKGSGPKSETSE-ERAARLAKMSAYAAQRLANE--- 622
+EP+ P +PKA+ +R S TS E AA LA + +L E
Sbjct: 368 MEPMSCDDSTPPARQHKPKAKATKRSAHAASSSTSNVEAAAALAALQEQQRIQLEQEQYL 427
Query: 621 ----SPEQRATRLKRMSEYAAKRLSSETREQRAIRLA--RMSAYAARRLANETPAQRQAR 460
E+R K M E A K RE++ LA R + A+ QA
Sbjct: 428 LQLAEDERRKREQKEMKEKAEKERQLRAREEQEHFLAVQREEQAQLEKQREREEAELQAT 487
Query: 459 LLRMSAYAAKRQASKKS 409
L R + A+++A +K+
Sbjct: 488 LARCAEKQARQEALRKT 504
>AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolog
protein 1 protein.
Length = 622
Score = 34.3 bits (75), Expect = 0.10
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Frame = -1
Query: 786 VEPVDMIQEMDPLSLLEPKARR-RRKGSGPKSETSE-ERAARLAKMSAYAAQRLANE--- 622
+EP+ P +PKA+ +R S TS E AA LA + +L E
Sbjct: 368 MEPMSCDDSTPPARQHKPKAKATKRSAHAASSSTSNVEAAAALAALQEQQRIQLEQEQYL 427
Query: 621 ----SPEQRATRLKRMSEYAAKRLSSETREQRAIRLA--RMSAYAARRLANETPAQRQAR 460
E+R K M E A K RE++ LA R + A+ QA
Sbjct: 428 LQLAEDERRKREQKEMKEKAEKERQLRAREEQEHFLAVQREEQAQLEKQREREEAELQAT 487
Query: 459 LLRMSAYAAKRQASKKS 409
L R + A+++A +K+
Sbjct: 488 LARCAEKQARQEALRKT 504
>Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical
protein F53B6.1 protein.
Length = 258
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 428 LFAAYADILNSLACLCAGVSLASRRAAYADILA 526
+ A IL S++C+C G+ L +RR+ YA++++
Sbjct: 21 IVTALISILFSISCICYGIWLLARRSQYAELVS 53
>AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical
protein F32D1.3 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 608 APLD*SVCPNMQLKDFHQRRENRERLGWQECLHMQPVDL 492
AP +V N+ L +FH + NR L +++ LH+ P L
Sbjct: 649 APESVTVLQNIALAEFHMQNYNRSLLFYRKALHLDPTHL 687
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -1
Query: 699 KSETSEERAARLAKMSAYAAQRLANES--PEQRATRLKRMSEYAAKRLSSETREQRAIRL 526
K + ER AR + + +R+ E+ EQ+ KR E R+ E + +R +
Sbjct: 2548 KQRDAREREAREREAREHQ-ERMQREAYMKEQQLLERKRAIE-ENNRIMEEQQREREMEA 2605
Query: 525 ARMSAYAARRLANETPAQRQARL 457
AR A ARR A E A Q RL
Sbjct: 2606 ARKEA--ARRAAEEAYAAEQQRL 2626
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -1
Query: 639 QRLANESPEQ-RATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAA----RRLANETPA 475
QR NE ++ R KR+ E +RL + +R + R+ A RR+A + A
Sbjct: 214 QRKRNEELKRLRIAEEKRLLE-EQQRLREQMERERLAEIKRLEEAARLEDERRIAADIEA 272
Query: 474 QRQARLLRMSAYAAKRQA 421
Q+QA L +M A K A
Sbjct: 273 QKQAMLQKMQAEQNKHIA 290
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical protein
F09C3.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -1
Query: 612 QRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLLRMSAYAA 433
QR + ++ S A KR E RE+ +LAR Y L N + R+ + A
Sbjct: 1220 QRERQEQKKSIAATKRKLMEQREELHEKLARYEEYLETCLQNLSRTSRRLSFRPNTKEAG 1279
Query: 432 KRQASKKSLSTV 397
K Q + SL +
Sbjct: 1280 KIQKERASLDQI 1291
>Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -1
Query: 615 EQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLL-RMSAY 439
E+R R S+ +RL EQR+++ NE+ +++AR + +
Sbjct: 11 ERRRERSPSTSDSDEERLQKRLAEQRSLKKDEKRRQKEEMKKNESAEEKRARRMEKKMRK 70
Query: 438 AAKRQASKKSLSTVNDSLNYSIMPN 364
AKR+ + + + LNY+ + N
Sbjct: 71 DAKRKDADAEDTLIPPELNYTNLNN 95
>Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -1
Query: 615 EQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLL-RMSAY 439
E+R R S+ +RL EQR+++ NE+ +++AR + +
Sbjct: 11 ERRRERSPSTSDSDEERLQKRLAEQRSLKKDEKRRQKEEMKKNESAEEKRARRMEKKMRK 70
Query: 438 AAKRQASKKSLSTVNDSLNYSIMPN 364
AKR+ + + + LNY+ + N
Sbjct: 71 DAKRKDADAEDTLIPPELNYTNLNN 95
>U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical
protein B0261.1 protein.
Length = 779
Score = 28.7 bits (61), Expect = 5.1
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Frame = -1
Query: 744 LLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAK- 568
+ E + + K + + E +EE+ R A +R + ++A L+R + AAK
Sbjct: 334 MTEMEEEAQEKKAKGEYEKAEEKRIREQNRLQKATERNQAKELVKQAKELERDARNAAKL 393
Query: 567 ----------RLSSETR--EQRAIRLARMSAYAARRLANETPA-QRQARLLRMSAYAAKR 427
+ SETR E+ A++ AR+ A A+R+A E A +++R L S A
Sbjct: 394 NMKADKEARAQEKSETRQLEKTALKEARLMATEAKRIAMEARAIIKESRKLEKSKKADSV 453
Query: 426 QASKKSL 406
Q+ +L
Sbjct: 454 QSDSHNL 460
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 388 AIVHCTKRLLASLPFRSICRHPQ*SSLPL 474
A+ H KR +S+ F I R PQ SSL L
Sbjct: 17 ALAHIAKRTFSSVNFSQILRRPQNSSLRL 45
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 388 AIVHCTKRLLASLPFRSICRHPQ*SSLPL 474
A+ H KR +S+ F I R PQ SSL L
Sbjct: 17 ALAHIAKRTFSSVNFSQILRRPQNSSLRL 45
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 388 AIVHCTKRLLASLPFRSICRHPQ*SSLPL 474
A+ H KR +S+ F I R PQ SSL L
Sbjct: 17 ALAHIAKRTFSSVNFSQILRRPQNSSLRL 45
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
ZK430.1 protein.
Length = 1650
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -1
Query: 570 KRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLL 454
K + +ET+ + +R+ + SAY + +A P+Q ++ +L
Sbjct: 1078 KFIVAETKSEEKMRMCQNSAYTLKLIAKNLPSQSESLVL 1116
>U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical
protein F30B5.7 protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 209 GTILRNSDRNSIGDC*TLSLKNIMFSS*MKIVFIFYVQAVLTSQLSEGF-HLK 54
G+IL+NS+ N DC L L+++ + + + FI ++ S+ S F HLK
Sbjct: 253 GSILQNSETNIYKDCAILLLESLAAGTFIYVTFI----EIMASEKSNDFNHLK 301
>AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical
protein T02H6.1b protein.
Length = 528
Score = 28.3 bits (60), Expect = 6.7
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Frame = -1
Query: 729 ARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSET 550
A R+RK G SEE AA++++ A + E SE A + E
Sbjct: 19 ATRKRKNGGKSDAKSEEMAAKMSRRQKIMAATEIHSDEEDSLAGSAAASE-AGSDVEYED 77
Query: 549 REQRAIRLARMSAYAARRLANETPAQRQ-ARLLRMSAYAAKRQASKKSLSTV--NDSLNY 379
+R R A+ ++ + T Q + A LR A A K+ V D L
Sbjct: 78 AHERNYREAKK---LLDKIQSTTTTQEEVAEKLRDDAVARTGTQVKRVADVVELEDDLEI 134
Query: 378 SIMPNQ 361
S P++
Sbjct: 135 SYKPHR 140
>AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical
protein T02H6.1a protein.
Length = 550
Score = 28.3 bits (60), Expect = 6.7
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Frame = -1
Query: 729 ARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSET 550
A R+RK G SEE AA++++ A + E SE A + E
Sbjct: 19 ATRKRKNGGKSDAKSEEMAAKMSRRQKIMAATEIHSDEEDSLAGSAAASE-AGSDVEYED 77
Query: 549 REQRAIRLARMSAYAARRLANETPAQRQ-ARLLRMSAYAAKRQASKKSLSTV--NDSLNY 379
+R R A+ ++ + T Q + A LR A A K+ V D L
Sbjct: 78 AHERNYREAKK---LLDKIQSTTTTQEEVAEKLRDDAVARTGTQVKRVADVVELEDDLEI 134
Query: 378 SIMPNQ 361
S P++
Sbjct: 135 SYKPHR 140
>U97552-8|AAB52863.2| 131|Caenorhabditis elegans Hypothetical
protein W05H7.1 protein.
Length = 131
Score = 27.9 bits (59), Expect = 8.9
Identities = 27/118 (22%), Positives = 52/118 (44%)
Frame = -1
Query: 774 DMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRL 595
D E +P SL + +RRR +++ + RL + + ++LA + EQ
Sbjct: 14 DFFDEYEPCSLSPEEIQRRR---------AQQDSLRLFQDTLEQVRQLAEQLQEQ----F 60
Query: 594 KRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLLRMSAYAAKRQA 421
++ +E A+ + + +RAIR + R++ E +R+ A +RQA
Sbjct: 61 RQATEQTARIREEQKKIRRAIRRQKKLTQKRRKMLVEREVKRRRVAKMFFACRERRQA 118
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 27.9 bits (59), Expect = 8.9
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = -1
Query: 699 KSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLAR 520
+S T E++ +L + Q++A ES E ++ K+ R ++
Sbjct: 621 ESATKEDKLDKLEEELQEKKQQIA-ESKELVTYLHSQIDAKQTKQPKLGRRSTLLSTVSE 679
Query: 519 MSAYAARRLANETPAQRQARLLRMSAYAAKRQA---SKKSLSTVNDSL 385
M R A E A + R MS A KR+ SKKS ST N ++
Sbjct: 680 MDTSVYMREAEEVRALEEQRQALMSNLAEKRRQLVDSKKSQSTANTTI 727
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,714
Number of Sequences: 27780
Number of extensions: 282727
Number of successful extensions: 799
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -