Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11l02
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              25   0.81 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              25   0.81 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.81 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   10.0 

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 515 DILANLIALCSLVSDESLLAAYSDIRFSLVARCSG 619
           +++  L+A CS++SD ++      IRF+ + +C G
Sbjct: 95  NVIKKLVAECSVISDANIY-----IRFNKLVKCFG 124


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 515 DILANLIALCSLVSDESLLAAYSDIRFSLVARCSG 619
           +++  L+A CS++SD ++      IRF+ + +C G
Sbjct: 95  NVIKKLVAECSVISDANIY-----IRFNKLVKCFG 124


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 777 VDMIQEMDPLSLLEPK--ARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPE 613
           V  ++E++ L +   K  A     GS  K ++  ERA +L+    YA+ RL ++  E
Sbjct: 78  VHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -1

Query: 774 DMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRL 595
           +  +EM    LLE K RR R+   P+  T     A L + +    +      P  R T  
Sbjct: 141 EQTEEMYREMLLEHKKRRARRDIHPELNTQGIALADLTQRAQIGQKHKLLIGPSIRITPA 200

Query: 594 KR 589
           K+
Sbjct: 201 KK 202


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 612 VPVTHLPASVLHMQTSWLAVRLSLLMFHSLVLSLSFVYAL*APTMIVDPFLVSY 773
           V V +LPA      T  +++ LSL++F      L  V  +  PT +V P +  Y
Sbjct: 252 VLVFYLPAEAGEKVTLGISILLSLVVF------LLLVSKILPPTSLVLPLIAKY 299


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 30   QLAKHCTELKVKTF*KLRSQYCLNIKDKNNFH 125
            Q  KH  +   +   K    Y L+++D+N +H
Sbjct: 1083 QTLKHIIQTHGEMTDKQVEAYMLSLRDENRYH 1114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,732
Number of Sequences: 438
Number of extensions: 3324
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)