Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k24
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 54 3e-08
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 51 2e-07
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.64
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 29 0.84
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.84
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 29 0.84
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 28 2.0
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.6
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 27 3.4
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 4.5
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 54.0 bits (124), Expect = 3e-08
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Frame = -3
Query: 802 WGFNNWSWSVTKQELDFIDFN--NGKYCAGVVAFVSIKVKSFDIYRENIGYAT-SFAATK 632
+GFN WS S+ +DF+D N NG+ G+ V + +K Y E+IGY + K
Sbjct: 69 FGFNGWSSSIRSINVDFMDENKENGRISLGLSVIVRVTIKD-GAYHEDIGYGSIDNCRGK 127
Query: 631 GFAIYKSRKCAVTNALRETLLSFGGSVAADLID 533
A K +K T+AL+ L +FG S+ + D
Sbjct: 128 ASAFEKCKKEGTTDALKRALRNFGNSLGNCMYD 160
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 50.8 bits (116), Expect = 2e-07
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Frame = -3
Query: 802 WGFNNWSWSVTKQELDFI-DFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT-SFAATKG 629
+GFN WS S+ +D++ + K+ G+ V + +K + E++GY + K
Sbjct: 61 FGFNGWSSSIQDIHVDYVEETKEKKFNVGISVIVRVTLKD-GSFHEDVGYGSIENCRVKA 119
Query: 628 FAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNIANRAE 449
A K +K T+AL+ L +FG S+ L D + + +L + +E N + RA
Sbjct: 120 LAYEKCKKEGTTDALKRALRNFGSSMGNCLYD--KRYIQKILKMAPAQAEFNYDNLLRAN 177
Query: 448 LKPSPVKPRKEGAPV 404
+P +K P+
Sbjct: 178 KRPYARFAQKVSTPI 192
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 819 TMVTHSGASTIGAGVSPNKNWISSTSTTGSIAPASSPLYR 700
T+ H + T VSPNK WI+++S+ G+I S+ +R
Sbjct: 49 TLFGHEKSVTC-VSVSPNKRWIATSSSDGTIKIWSALTFR 87
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 40 WRHCRDPETSSCRRHRWVPYLRSKYLDLGD*GAACQNCC*LCLHLASDQPDHCSSSSV 213
+R+C++ R +R VP + + DLG A LC+HL S++ + +S ++
Sbjct: 9 YRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFP-LCIHLVSNEYEQITSEAL 65
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 813 VTHSGASTIGAGVSPNKNWISSTSTTGSIAPASSPLY 703
V+ S S+ S N ST+TTGS +SSP Y
Sbjct: 259 VSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFY 295
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 40 WRHCRDPETSSCRRHRWVPYLRSKYLDLGD*GAACQNCC*LCLHLASDQPDHCSSSSV 213
+R+C++ R +R VP + + DLG A LC+HL S++ + +S ++
Sbjct: 9 YRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFP-LCIHLVSNEYEQITSEAL 65
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 217 LKQMMKSNDQADQRQDVSKASSSFDRLLLNLPSQDILIEDTAPNGGDGKRKSPGPDSGAK 38
+ ++ +S A + +S+A S FD L+LPSQD PNG + + P G
Sbjct: 510 IDELRQSTPVARDSELLSRAHS-FDLNRLDLPSQDKSTSYEVPNGTENQSPRPVTSLGFV 568
Query: 37 RRNSFNK 17
F +
Sbjct: 569 NETFFEE 575
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 529 LENKTESVLIGTESHSENNLNIANRAELKPSPVKPRKEGAP 407
LEN+T++ + E++++N+ N E+K + ++ AP
Sbjct: 124 LENETDTKSLPVEANNDNSARKKNEYEMKKKGAQSKQTNAP 164
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = -3
Query: 217 LKQMMKSNDQADQR---QDVSKAS--SSFDRLLLNLPSQDILIEDTAPNGGDGKRKSPGP 53
LKQ SN D + ++++ + SS +R+++NL DI+++ + ++ P
Sbjct: 551 LKQQPPSNSPEDSQVLTDEINEVNDFSSSERIVINLDEYDIIVDSKTSSHNKQLKRRPSN 610
Query: 52 DSGAKRRNSFNKLNI 8
D+ + S + I
Sbjct: 611 DTLTQEAKSKKQAKI 625
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 544 DLIDLLENKTESVLIGTESHSENNLNIA 461
D+ DL +N+T SV GT SH+ N N++
Sbjct: 116 DISDLSKNQTLSVSDGTHSHAINFNNMS 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,714
Number of Sequences: 5004
Number of extensions: 54411
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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