Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k24
(858 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12134-1|AAA85793.1| 418|Homo sapiens RAD52 protein. 85 3e-16
L33262-1|AAB05203.1| 418|Homo sapiens protein ( Homo sapiens DN... 85 3e-16
BC104017-1|AAI04018.1| 399|Homo sapiens RAD52 protein protein. 85 3e-16
BC104015-1|AAI04016.1| 399|Homo sapiens RAD52 protein protein. 85 3e-16
AY540753-1|AAT44403.1| 418|Homo sapiens rhabdomyosarcoma antige... 85 3e-16
AY527412-1|AAS00097.1| 418|Homo sapiens RAD52 homolog (S. cerev... 85 3e-16
U27516-1|AAA87554.1| 419|Homo sapiens recombination protein RAD... 83 2e-15
AF125950-1|AAD24577.1| 226|Homo sapiens DNA repair protein RAD5... 75 4e-13
AF187983-2|AAF05531.1| 76|Homo sapiens RAD52 protein. 66 1e-10
AF187983-1|AAF05532.1| 126|Homo sapiens RAD52 beta isoform prot... 60 1e-08
BC114954-1|AAI14955.1| 121|Homo sapiens RAD52 protein protein. 56 2e-07
AF125949-1|AAD24576.1| 139|Homo sapiens DNA repair protein RAD5... 56 2e-07
AF187983-3|AAF05533.1| 52|Homo sapiens RAD52 gamma isoform pro... 41 0.005
BT006671-1|AAP35317.1| 480|Homo sapiens hypothetical protein MG... 31 7.1
BC002557-1|AAH02557.1| 480|Homo sapiens GATA binding protein 2 ... 31 7.1
>U12134-1|AAA85793.1| 418|Homo sapiens RAD52 protein.
Length = 418
Score = 85.0 bits (201), Expect = 3e-16
Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNI 464
+K ++ K+RK AVT+ L+ L SFG ++ ++D ++ + L + E +L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKL-PRQLPLEVDLTK 190
Query: 463 ANRAELKPSPVKPR 422
A R +L+PS + R
Sbjct: 191 AKRQDLEPSVEEAR 204
>L33262-1|AAB05203.1| 418|Homo sapiens protein ( Homo sapiens DNA
repair and recombination homologue (RAD52) gene,
complete cds. ).
Length = 418
Score = 85.0 bits (201), Expect = 3e-16
Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNI 464
+K ++ K+RK AVT+ L+ L SFG ++ ++D ++ + L + E +L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKL-PRQLPLEVDLTK 190
Query: 463 ANRAELKPSPVKPR 422
A R +L+PS + R
Sbjct: 191 AKRQDLEPSVEEAR 204
>BC104017-1|AAI04018.1| 399|Homo sapiens RAD52 protein protein.
Length = 399
Score = 85.0 bits (201), Expect = 3e-16
Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNI 464
+K ++ K+RK AVT+ L+ L SFG ++ ++D ++ + L + E +L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKL-PRQLPLEVDLTK 190
Query: 463 ANRAELKPSPVKPR 422
A R +L+PS + R
Sbjct: 191 AKRQDLEPSVEEAR 204
>BC104015-1|AAI04016.1| 399|Homo sapiens RAD52 protein protein.
Length = 399
Score = 85.0 bits (201), Expect = 3e-16
Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNI 464
+K ++ K+RK AVT+ L+ L SFG ++ ++D ++ + L + E +L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKL-PRQLPLEVDLTK 190
Query: 463 ANRAELKPSPVKPR 422
A R +L+PS + R
Sbjct: 191 AKRQDLEPSVEEAR 204
>AY540753-1|AAT44403.1| 418|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.23 protein.
Length = 418
Score = 85.0 bits (201), Expect = 3e-16
Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNI 464
+K ++ K+RK AVT+ L+ L SFG ++ ++D ++ + L + E +L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKL-PRQLPLEVDLTK 190
Query: 463 ANRAELKPSPVKPR 422
A R +L+PS + R
Sbjct: 191 AKRQDLEPSVEEAR 204
>AY527412-1|AAS00097.1| 418|Homo sapiens RAD52 homolog (S.
cerevisiae) protein.
Length = 418
Score = 85.0 bits (201), Expect = 3e-16
Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNI 464
+K ++ K+RK AVT+ L+ L SFG ++ ++D ++ + L + E +L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKL-PRQLPLEVDLTK 190
Query: 463 ANRAELKPSPVKPR 422
A R +L+PS + R
Sbjct: 191 AKRQDLEPSVEEAR 204
>U27516-1|AAA87554.1| 419|Homo sapiens recombination protein RAD52
protein.
Length = 419
Score = 82.6 bits (195), Expect = 2e-15
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D N GK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNKGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLIDLLENKTESVLIGTESHSENNLNI 464
+K ++ K+RK AVT+ L+ L SFG ++ ++D ++ + L + E +L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKL-PRQLPLEVDLTK 190
Query: 463 ANRAELKPSPVKPR 422
A R +L+PS + R
Sbjct: 191 AKRQDLEPSVEEAR 204
>AF125950-1|AAD24577.1| 226|Homo sapiens DNA repair protein RAD52
beta isoform protein.
Length = 226
Score = 74.5 bits (175), Expect = 4e-13
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA 641
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEG 131
Query: 640 -ATKGFAIYKSRKCAVTNALRETL 572
+K ++ K+RK AVT+ L+ L
Sbjct: 132 LKSKALSLEKARKEAVTDGLKRAL 155
>AF187983-2|AAF05531.1| 76|Homo sapiens RAD52 protein.
Length = 76
Score = 66.5 bits (155), Expect = 1e-10
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = -3
Query: 775 VTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA-ATKGFAIYKSRKCA 599
+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S +K ++ K+RK A
Sbjct: 1 ITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEGLKSKALSLEKARKEA 59
Query: 598 VTNALRETLLSFGGSV 551
VT+ L+ L SFG ++
Sbjct: 60 VTDGLKRALRSFGNAL 75
>AF187983-1|AAF05532.1| 126|Homo sapiens RAD52 beta isoform
protein.
Length = 126
Score = 60.1 bits (139), Expect = 1e-08
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = -3
Query: 775 VTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA-ATKGFAIYKSRKCA 599
+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S +K ++ K+RK A
Sbjct: 1 ITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEGLKSKALSLEKARKEA 59
Query: 598 VTNALRETL 572
VT+ L+ L
Sbjct: 60 VTDGLKRAL 68
>BC114954-1|AAI14955.1| 121|Homo sapiens RAD52 protein protein.
Length = 121
Score = 55.6 bits (128), Expect = 2e-07
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVK 689
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLK 116
>AF125949-1|AAD24576.1| 139|Homo sapiens DNA repair protein RAD52
gamma isoform protein.
Length = 139
Score = 55.6 bits (128), Expect = 2e-07
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = -3
Query: 820 NYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVK 689
N + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K
Sbjct: 73 NLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLK 116
>AF187983-3|AAF05533.1| 52|Homo sapiens RAD52 gamma isoform
protein.
Length = 52
Score = 41.1 bits (92), Expect = 0.005
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = -3
Query: 775 VTKQELDFIDFNNGKYCAGVVAFVSIKVK 689
+T+Q +DF+D NNGK+ GV AFV +++K
Sbjct: 1 ITQQNVDFVDLNNGKFYVGVCAFVRVQLK 29
>BT006671-1|AAP35317.1| 480|Homo sapiens hypothetical protein
MGC2306 protein.
Length = 480
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 810 THSGASTIGAGVSPNKNWISSTSTTGSIAPASS 712
THSG+ G +P K STTG+ +PASS
Sbjct: 164 THSGSHLFGFPPTPPKEVSPDPSTTGAASPASS 196
>BC002557-1|AAH02557.1| 480|Homo sapiens GATA binding protein 2
protein.
Length = 480
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 810 THSGASTIGAGVSPNKNWISSTSTTGSIAPASS 712
THSG+ G +P K STTG+ +PASS
Sbjct: 164 THSGSHLFGFPPTPPKEVSPDPSTTGAASPASS 196
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,301,867
Number of Sequences: 237096
Number of extensions: 2002970
Number of successful extensions: 5511
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5488
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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