Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k23
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...   104   2e-23
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    28   1.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   4.3  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.9  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score =  104 bits (249), Expect = 2e-23
 Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 14/227 (6%)
 Frame = -2

Query: 776 VTYMLQQILDSPKSNNSNLKDIALTYEWFFVPVLNPDGYEYTHTNNRLWRKNR---NNE- 609
           V Y   Q+L +   ++ +++ +   +EW F+PVLN DGYEYT +N+RLW KNR   NN  
Sbjct: 258 VCYAAWQLL-AKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSNDRLWSKNRQPLNNSE 316

Query: 608 -YGVDLNRNFDHAFGTVGVSFSHYEETYCGAKAFSEKETIAMSNFV----RNHSNHLEYY 444
            +G++L+ N+  AFG  G +       Y G   F   ET+A+ N +          +  +
Sbjct: 317 CFGINLDANW--AFGFNG-NIDPCSNEYGGLSPFQANETMALFNLITESLSQEQKKVVGF 373

Query: 443 LAFHSYGQAMILPYANT----RAHMENFDTVAAMAKQAADHIALRYNTRYVYGTAYDTV- 279
           L  HSY Q+++ PYA T        ENF+ +A    +    +  RY T       YD   
Sbjct: 374 LDVHSYSQSVLWPYAYTCDLFPPDTENFEELAIGLVKELHRVNSRYYTYQQACIPYDGFH 433

Query: 278 GYVTSGVSGCWVKETFSVPYVLTFELPDRGQYGFALPNEKITPTCIE 138
            +   G +  WV     V +     L D G YG+ LP ++I PT  E
Sbjct: 434 KHYLPGTAIDWVYFAADVAWPFNIRLRDMGDYGYLLPAKQIVPTAKE 480



 Score = 30.3 bits (65), Expect = 0.35
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 828 VIVEGGIHAREWIG 787
           +I++GG HAREWIG
Sbjct: 241 IIIQGGSHAREWIG 254


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 428  YGQAMILPYANTRAHMENFDTVAAMAKQAADHIALRYNTRYVYGTAYD-TVGYVTSGVSG 252
            +  A  LP++ T + + + D+++A+ K A DH    YN   +  +  + T+  +TS  SG
Sbjct: 1569 FTMARFLPFS-TSSTLADKDSLSAVKKLALDHAHCDYNFSVIASSTNEVTISELTS-ESG 1626

Query: 251  C 249
            C
Sbjct: 1627 C 1627


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 460 LLWFLTKLDIAIVSFSE--NAFAPQYVSS*WEKLTPTVPKAWSKFL-FKST 603
           L WF  + +  I + S+  +  A   V+  WE  +P V + WSKF  F ST
Sbjct: 172 LQWFWDENNFIIDTPSKGPSELAILIVNCLWEAFSPQVMEVWSKFTRFSST 222


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 689 FVPVLNPDGYEYTHTNNRLW 630
           F PVL   G  YT++  RLW
Sbjct: 78  FDPVLKFPGIHYTYSRERLW 97


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 785  PCFVTYMLQQILDSPKSNNSNLKDIALTYEWFFVPVLNPDGYEYTHT---NNRLWRKNRN 615
            P F     Q  LD P +  S L D +  Y  F  P + P+  +   +   N RLWR+NRN
Sbjct: 906  PAFNELEYQSELDMPLT--SYLFDWSRKY--FTEPQMRPNEDDEPGSICYNQRLWRRNRN 961

Query: 614  NE 609
             +
Sbjct: 962  EK 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,740,163
Number of Sequences: 5004
Number of extensions: 83668
Number of successful extensions: 240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)