Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k23
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    26   0.37 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.85 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.85 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.0  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 12/51 (23%), Positives = 20/51 (39%)
 Frame = -2

Query: 674 NPDGYEYTHTNNRLWRKNRNNEYGVDLNRNFDHAFGTVGVSFSHYEETYCG 522
           N + Y+Y + NN     N NN Y  +  + + +      +        YCG
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIYCG 375


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 668 DGYEYTHTNNRLWRKNRNNEYGVDLNRNF 582
           + Y+Y++ NN  +  N NN Y  + N N+
Sbjct: 87  NNYKYSNYNN--YNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 668 DGYEYTHTNNRLWRKNRNNEYGVDLNRNF 582
           + Y+Y++ NN  +  N NN Y  + N N+
Sbjct: 87  NNYKYSNYNN--YNNNYNNNYNNNYNNNY 113


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 677 ERAQRTIRRSTQCLLNSNYSISASRESAEACTSQNTEPIHS 799
           ERA+    R T+C+ NS      S E+  + TS+ +  + S
Sbjct: 249 ERAKSIRARRTECVTNSVTCDRPSDEAEPSSTSKKSGIVRS 289


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = -2

Query: 422 QAMILPYANTRAHMENFDTVAAMAKQAADHIALRYNTRYVYGTAYDTVGYVTSGVSGCWV 243
           QAMI       A  + +  +AA+   A   I     +RYV+ +A +    + +    C +
Sbjct: 314 QAMIAGIVVISAGADAYPPLAAIVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGI 373

Query: 242 KETFSVPYVLTFELPD 195
             +  VP+    E  D
Sbjct: 374 LGSILVPFFYVQEDDD 389


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 650 HTNNRLWRKNRNNEYGVDLNRNFDH 576
           H NN     N NN Y    N N+++
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNNYNN 348


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 668 DGYEYTHTNNRLWRKNRNNEYGVDLNRNF 582
           + Y+Y++ NN     N  N Y  + N N+
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNNNYNNNY 348


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 398 NTRAHMENFDTVAAMAKQAADHIALRYN 315
           N R  ++  DTVAA      +++ L YN
Sbjct: 340 NIRPMVKQIDTVAAEWPATTNYLYLTYN 367


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 284  TVGYVTSGVSGCWVKETFSVPY 219
            T+  V S  SGC   ET S PY
Sbjct: 1704 TMRPVVSCASGCTAVETKSKPY 1725


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,532
Number of Sequences: 438
Number of extensions: 6124
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)