Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k19
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po... 54 3e-08
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 30 0.30
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 29 0.90
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 1.2
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 27 2.1
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 27 2.1
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.1
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 27 2.1
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 27 2.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 6.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.4
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 8.4
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 8.4
>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 189
Score = 53.6 bits (123), Expect = 3e-08
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Frame = -1
Query: 664 ISTFVLGNVYCASDLTEEEIGHVIEGRVFPPED-PNNSNWQLDTRVHV--NGGEYIGFVR 494
+ TF+L +V C + ++ + + G+V P + DTR + + + V
Sbjct: 3 LHTFLLLSVLCFAGCIQQSLQAEVYGKVLTNTILPKINLLSYDTRARLISSNKTFETVVE 62
Query: 493 EDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSK---GKYRARKVNYVQTSQVIQVPY 323
DG+F N+P Y + + DY + + IN Y + +S Y
Sbjct: 63 RDGSFTFPNVPDEIYFLRLESIDYEFSEFHIIINESIVYPYYTSPAEKRPASSTAKNTSY 122
Query: 322 PLRMKPVTKFRYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLK 152
P++++ V K Y + ++ L L +PM+++ + + L+ ILPK+ + + E +
Sbjct: 123 PIKVRAVLKRDYLKEPRKFSLIRLLKSPMMLLSLASVVLVFILPKLNIEAKALEQAR 179
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = +2
Query: 470 MHHKCPIFSDKTDVFASVNVNAGVQLPIAVVGIFRRKHTAFDNMSDFFFSQITSAINIAE 649
M++ CP+F D + + V I + I R FD+ + + S I E
Sbjct: 206 MYNACPVFKDNNFHKNATDAAHAVWRNIFIEPIVNRLAKYFDSSYKLTINDVRSLFYICE 265
Query: 650 HECRNVYYDDFC 685
+E + DFC
Sbjct: 266 YEIAIKDHSDFC 277
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.90
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 387 LELISTRTGSYM*SGCTISTTYEPDGKLCTT 479
LE S RT Y +G + T PDG LC +
Sbjct: 179 LETFSLRTSHYGHTGYVSAVTISPDGSLCAS 209
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 96 VNISDISGTSDIFARLLICFKSSLVSGSFII 188
V ISD SGTS I IC K+ + + SF++
Sbjct: 89 VAISDPSGTSSIEKVSSICLKNDIQTSSFVL 119
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 532 VHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMY 416
+H + E+ VREDGT VV + P +V HPD +
Sbjct: 217 IHGDFNEFNIIVREDGTAVVIDFPQ---MVSTSHPDAQF 252
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 544 LDTRVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPV-RVEINSKGKYRAR 368
+DT + G EY+ D V +L +++VE + +Y+ E + + + KG
Sbjct: 235 IDTLI-AQGKEYLFVSNIDNLGAVVDLNILNHMVE-TNAEYLMELTNKTKADVKGGTLID 292
Query: 367 KVNYVQTSQVIQVP--YPLRMKPVTKFRYFQVREQW 266
V+ ++ QVP + K + KF+YF W
Sbjct: 293 YDGNVRLLEIAQVPPQHVEEFKSIKKFKYFNTNNLW 328
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 175 PETKEDLKQISNLAKISDVPEMSEMFTKIFNRGSVPKPT--SSKAKQIKK 32
PET + +N+ K + VP + + N+GS P+ SS++K+ K+
Sbjct: 637 PETGPNKPSKNNILKSTQVPVTPKQKSSTANKGSTSSPSPPSSESKKTKR 686
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -3
Query: 338 HSSTLPAEDETSHQIQIFSSSGTME 264
H+ST+P++DE + I +++GT++
Sbjct: 112 HNSTVPSKDEQAQDISKINTNGTLQ 136
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -1
Query: 262 LTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLKQISNL 137
LT F+ + + ++LPL ++I+P +D + K+ + +NL
Sbjct: 40 LTFFVSLCVFLSIILPLIFLVIIPHAQSDRKIKDTNMETTNL 81
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = -1
Query: 526 VNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRARKVNYVQ 350
VN + +++ D +++ S +YV++ + P + +P+R +NS G + ++VQ
Sbjct: 1129 VNTKRPVIYMKRDDILGIYS--SIAYVIDSIAPPDVNDPLRAVVNSLGPVSEQDNDFVQ 1185
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 588 AVCFL-LKIPTTAIGNWTPAFTLTEANTSVLSEKM 487
+VCF L IP+T G P F + T VL+E++
Sbjct: 1509 SVCFQSLLIPSTLQGFRNPVFRIMRIMTEVLTEEL 1543
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 211 FLIMILPKMMNDPETK-EDLKQISNLAKISDVPEMSEMFTKIFNRGSVPKPTSSKAKQIK 35
F++ + +++ ET ++++ LA+ S EMS F+K+ ++ K S K +K
Sbjct: 3771 FVLNLFDSLLSSIETATKNMRTFKELAETSSFIEMSSCFSKVLRAFNL-KFQSMKLSSLK 3829
Query: 34 KR 29
++
Sbjct: 3830 EK 3831
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 585 RPSITCPISSSVRSLAQ*TLPST 653
RPS+T P+ SS+ S A +PST
Sbjct: 298 RPSMTGPVPSSMGSEATLNMPST 320
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 456 VHTSSKSYTQ-TTCTNPCVSKSILKANTELE 367
+ + SYT C N SK IL+A TE++
Sbjct: 21 IMVAGSSYTSYQACINSLCSKQILEAETEID 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,089
Number of Sequences: 5004
Number of extensions: 67031
Number of successful extensions: 253
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -