Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k19
(733 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-2162|AAF58075.1| 245|Drosophila melanogaster CG8397-PA... 225 4e-59
AY058342-1|AAL13571.1| 623|Drosophila melanogaster GH11762p pro... 31 1.6
AE014298-2074|AAF48401.1| 623|Drosophila melanogaster CG9512-PA... 31 1.6
AE014296-3165|AAF49150.3| 1242|Drosophila melanogaster CG9299-PA... 30 2.8
AY071510-1|AAL49132.1| 916|Drosophila melanogaster RE56564p pro... 30 3.7
AE014298-760|AAF46050.1| 916|Drosophila melanogaster CG11473-PA... 30 3.7
BT023810-1|AAZ66317.1| 388|Drosophila melanogaster RE24814p pro... 29 4.9
AY118533-1|AAM49902.1| 221|Drosophila melanogaster LD25803p pro... 29 4.9
AE014298-2075|AAF48402.1| 646|Drosophila melanogaster CG9509-PA... 29 4.9
BT024435-1|ABC86497.1| 93|Drosophila melanogaster IP02132p pro... 29 6.5
AY094822-1|AAM11175.1| 801|Drosophila melanogaster LD35927p pro... 29 8.6
AE014298-1122|AAS65281.1| 801|Drosophila melanogaster CG2258-PC... 29 8.6
AE014298-1121|AAS65280.1| 801|Drosophila melanogaster CG2258-PB... 29 8.6
AE014298-1120|AAF46320.1| 801|Drosophila melanogaster CG2258-PA... 29 8.6
>AE013599-2162|AAF58075.1| 245|Drosophila melanogaster CG8397-PA
protein.
Length = 245
Score = 225 bits (551), Expect = 4e-59
Identities = 114/240 (47%), Positives = 160/240 (66%), Gaps = 25/240 (10%)
Frame = -1
Query: 670 IYISTFVLGNVYCA-----SDLTEEEIG-HVIEGRVFPPED------------PNNSN-- 551
+++ T +L V C +L +E G + IEGRV PP+ P N N
Sbjct: 5 LFVFTALLALVSCEVIIGQDELVDEVSGLYTIEGRVSPPDSIFSPTQGGGRSAPVNKNTP 64
Query: 550 -WQLDTRVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYR 374
W + + +N GE+ GFVREDG F++ +PSGSY++++ HPD YEPVRVEIN KGK+R
Sbjct: 65 KWHTEITLSINDGEFKGFVREDGQFMISGVPSGSYILDVHHPDVFYEPVRVEINPKGKFR 124
Query: 373 ARKVNYVQTSQVIQVPYPLRMKPVTKFRYFQVREQWRLTDFLFNPMVVMMVLPLFLIMIL 194
ARKVN+VQ +Q++QV YPLR+KP+ F+YFQ REQW++TDFLF+PMV+MMVLPL L+++L
Sbjct: 125 ARKVNFVQPAQIMQVAYPLRVKPLMPFKYFQTREQWKITDFLFSPMVLMMVLPLLLMLVL 184
Query: 193 PKMMNDPETKEDLKQISNLAKISDVPEMSEMFTKIFNRGSVPKPTSSK----AKQIKKRQ 26
PKM+NDPETK+++ + +D+PE+SEM T + G P+P K +Q KKR+
Sbjct: 185 PKMINDPETKKEIDNLQFPKMGNDMPEISEMLTSLLT-GKQPEPKEKKPAPAVRQAKKRK 243
>AY058342-1|AAL13571.1| 623|Drosophila melanogaster GH11762p
protein.
Length = 623
Score = 31.1 bits (67), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 441 KSYTQTTCTNPCVSKSILKANTELEKSITFKLH 343
K Y T N V+KSIL AN E IT+ LH
Sbjct: 428 KGYVAATGFNDRVAKSILSANQETNTYITYLLH 460
>AE014298-2074|AAF48401.1| 623|Drosophila melanogaster CG9512-PA
protein.
Length = 623
Score = 31.1 bits (67), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 441 KSYTQTTCTNPCVSKSILKANTELEKSITFKLH 343
K Y T N V+KSIL AN E IT+ LH
Sbjct: 428 KGYVAATGFNDRVAKSILSANQETNTYITYLLH 460
>AE014296-3165|AAF49150.3| 1242|Drosophila melanogaster CG9299-PA
protein.
Length = 1242
Score = 30.3 bits (65), Expect = 2.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 378 YLPLELISTRTGSYM*SGCTISTTYEPDGKLCTTNVPSSRTKPMYSPPLT 527
YLP T+ +Y G + S+ K+ T + PS + P Y+PP+T
Sbjct: 174 YLPPSPGITKVATYTSPGYSYSSASPGISKVATYSSPSLSSVPYYAPPVT 223
>AY071510-1|AAL49132.1| 916|Drosophila melanogaster RE56564p
protein.
Length = 916
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 435 TISTTYEPDGKLCTTNVPSSRTKPMYSPPLT*TRVSNCQLLLLGSSGGNT 584
TIS+T P + +T + SS T +SP T T + L L +SG +
Sbjct: 448 TISSTTIPSTTISSTTISSSTTFSPFSPSTTTTTTTTAAALNLETSGSES 497
>AE014298-760|AAF46050.1| 916|Drosophila melanogaster CG11473-PA
protein.
Length = 916
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 435 TISTTYEPDGKLCTTNVPSSRTKPMYSPPLT*TRVSNCQLLLLGSSGGNT 584
TIS+T P + +T + SS T +SP T T + L L +SG +
Sbjct: 448 TISSTTIPSTTISSTTISSSTTFSPFSPSTTTTTTTTAAALNLETSGSES 497
>BT023810-1|AAZ66317.1| 388|Drosophila melanogaster RE24814p
protein.
Length = 388
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 543 WTPAFTLTEANTSVLSE--KMGHLWCIIYRLVHTSSKSYTQTTCTNPCVSKSILKANTEL 370
+T ++ + T VL E K HL C+ L H +++ + T+P V IL +N
Sbjct: 181 FTKGLSIQDQYTEVLQEYLKDSHLLCVFVLLSHPAARGELRLKSTDPKV-PPILTSNYLT 239
Query: 369 EKSITFKLHKSFKYL 325
E L + +Y+
Sbjct: 240 ESEDVATLMRGIRYI 254
>AY118533-1|AAM49902.1| 221|Drosophila melanogaster LD25803p
protein.
Length = 221
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 543 WTPAFTLTEANTSVLSE--KMGHLWCIIYRLVHTSSKSYTQTTCTNPCVSKSILKANTEL 370
+T ++ + T VL E K HL C+ L H +++ + T+P V IL +N
Sbjct: 14 FTKGLSIQDQYTEVLQEYLKDSHLLCVFVLLSHPAARGELRLKSTDPKV-PPILTSNYLT 72
Query: 369 EKSITFKLHKSFKYL 325
E L + +Y+
Sbjct: 73 ESEDVATLMRGIRYI 87
>AE014298-2075|AAF48402.1| 646|Drosophila melanogaster CG9509-PA
protein.
Length = 646
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 543 WTPAFTLTEANTSVLSE--KMGHLWCIIYRLVHTSSKSYTQTTCTNPCVSKSILKANTEL 370
+T ++ + T VL E K HL C+ L H +++ + T+P V IL +N
Sbjct: 439 FTKGLSIQDQYTEVLQEYLKDSHLLCVFVLLSHPAARGELRLKSTDPKV-PPILTSNYLT 497
Query: 369 EKSITFKLHKSFKYL 325
E L + +Y+
Sbjct: 498 ESEDVATLMRGIRYI 512
>BT024435-1|ABC86497.1| 93|Drosophila melanogaster IP02132p
protein.
Length = 93
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 499 VREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRAR 368
+++DG V SG + E H D+ Y R + GKYRAR
Sbjct: 25 LQKDGHNVDDYAESGRLISEQYHVDHNYAQDRSAYDELGKYRAR 68
>AY094822-1|AAM11175.1| 801|Drosophila melanogaster LD35927p
protein.
Length = 801
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -1
Query: 292 RYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLKQISNLAKISDVPE 113
+Y+Q+ +W + L L ++ IL + E ED+K ++ + + +
Sbjct: 533 QYYQMETRWSIKRLLLKTFTAACHLDYIIVDILLTSVLPLEIVEDMK--THFSNLDRFKQ 590
Query: 112 MSEMFTKIFNRGSVPKPTS 56
+ +M T IF+ G P P +
Sbjct: 591 LVKMLTIIFSLGQ-PMPVN 608
>AE014298-1122|AAS65281.1| 801|Drosophila melanogaster CG2258-PC,
isoform C protein.
Length = 801
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -1
Query: 292 RYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLKQISNLAKISDVPE 113
+Y+Q+ +W + L L ++ IL + E ED+K ++ + + +
Sbjct: 533 QYYQMETRWSIKRLLLKTFTAACHLDYIIVDILLTSVLPLEIVEDMK--THFSNLDRFKQ 590
Query: 112 MSEMFTKIFNRGSVPKPTS 56
+ +M T IF+ G P P +
Sbjct: 591 LVKMLTIIFSLGQ-PMPVN 608
>AE014298-1121|AAS65280.1| 801|Drosophila melanogaster CG2258-PB,
isoform B protein.
Length = 801
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -1
Query: 292 RYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLKQISNLAKISDVPE 113
+Y+Q+ +W + L L ++ IL + E ED+K ++ + + +
Sbjct: 533 QYYQMETRWSIKRLLLKTFTAACHLDYIIVDILLTSVLPLEIVEDMK--THFSNLDRFKQ 590
Query: 112 MSEMFTKIFNRGSVPKPTS 56
+ +M T IF+ G P P +
Sbjct: 591 LVKMLTIIFSLGQ-PMPVN 608
>AE014298-1120|AAF46320.1| 801|Drosophila melanogaster CG2258-PA,
isoform A protein.
Length = 801
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -1
Query: 292 RYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLKQISNLAKISDVPE 113
+Y+Q+ +W + L L ++ IL + E ED+K ++ + + +
Sbjct: 533 QYYQMETRWSIKRLLLKTFTAACHLDYIIVDILLTSVLPLEIVEDMK--THFSNLDRFKQ 590
Query: 112 MSEMFTKIFNRGSVPKPTS 56
+ +M T IF+ G P P +
Sbjct: 591 LVKMLTIIFSLGQ-PMPVN 608
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,750,687
Number of Sequences: 53049
Number of extensions: 728280
Number of successful extensions: 2282
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2282
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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